Evidence map›Paper›PMID 41644517›Full record

ArticleCell discovery2026

Integrating single-nucleus barcoding with spatial transcriptomics via Stamp-seq to reveal immunotherapy response-enhancing functional modules in NSCLC.

Yitong Pan, Huan Yan, Jinhuan Han, Rui Wu, Caiming Xu, Guang Lei, Xingyong Ma, Ying Guan, Zhao Li, Junyuan Deng and 9 more

Abstract read
In one paragraph

Article in Cell discovery, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Yitong Pan *Computation Biology Department, China National Center for Bioinformation, Beijing, China.
Huan Yan *Early Clinical Trial Center, Hunan Cancer Hospital/The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, Hunan, China.
Jinhuan Han *SeekGene BioSciences Co. Ltd., Beijing, China.
Rui Wu *Computation Biology Department, China National Center for Bioinformation, Beijing, China.
Caiming Xu *Department of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Biomedical Research Center, Monrovia, CA, USA.
Guang LeiFurong Laboratory, Central South University, Changsha, Hunan, China.
Xingyong MaSeekGene BioSciences Co. Ltd., Beijing, China.
Ying GuanSeekGene BioSciences Co. Ltd., Beijing, China.
Zhao LiGeneMind Biosciences Company Limited, Shenzhen, Guangdong, China.
Junyuan DengDepartment of Endoscopy, Shanghai Tenth Hospital, Tongji University, Shanghai, China.
Keyu LiSeekGene BioSciences Co. Ltd., Beijing, China.
Qingquan WeiSeekGene BioSciences Co. Ltd., Beijing, China.
Guangxin ZhangSeekGene BioSciences Co. Ltd., Beijing, China.
Lei LiuGeneMind Biosciences Company Limited, Shenzhen, Guangdong, China.
Ajay GoelDepartment of Molecular Diagnostics and Experimental Therapeutics, Beckman Research Institute of City of Hope, Biomedical Research Center, Monrovia, CA, USA. ajgoel@coh.org.ORCID http://orcid.org/0000-0003-1396-6341
Zhou YangDepartment of Medical Oncology, Shanghai East Hospital, Tongji University School of Medicine, Shanghai, China. zyang17@fudan.edu.cn.
Shaozhuo JiaoSeekGene BioSciences Co. Ltd., Beijing, China. jiaoshaozhuo@seekgene.com.ORCID http://orcid.org/0000-0003-1514-7200
Yongchang ZhangEarly Clinical Trial Center, Hunan Cancer Hospital/The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, Hunan, China. zhangyongchang@csu.edu.cn.ORCID http://orcid.org/0000-0002-6829-7176
Chenxi TianComputation Biology Department, China National Center for Bioinformation, Beijing, China. tiancx@big.ac.cn.

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82372937Natural Science Foundation of Beijing Municipality (Beijing Natural Science Foundation) L234035
6 · The paper itself

Abstract

Deciphering the spatial organization of cell states is fundamental for understanding development, tissue homeostasis and disease. Emerging advances in spatial transcriptomic profiling techniques allow transcript localization but face limitations in unambiguous cell state assignments due to cellular boundary inference, low gene detection and prohibitive cost. Here, a method, Stamp-seq, is developed that leverages custom-fabricated high-density DNA sequencing chips to label single nuclei with restriction enzyme-cleavable spatial barcodes. Stamp-seq spatial barcodes are distributed at a density of 1.6 μm on the chip, allowing for single physical cell resolution with precise subtype classification and spatial mapping (with an average 4 μm localization error) and reduced cost. We utilize Stamp-seq to delineate chemoimmunotherapy-responsive cellular ecosystems in non-small cell lung carcinoma, including a distinct IGHG1

Identifiers

PMID41644517
PMCPMC12877202

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.