Evidence map›Paper›PMID 41642527›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Bioluminescence-Based Growth Quantification of the Phytopathogenic Bacterium Pseudomonas syringae pv. tomato DC3000.

Yuga Fujinawa, Yijia Yan, Hirofumi Nakagami, Akira Mine

Abstract read
PubMed Publisher
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yuga FujinawaLaboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan.
Yijia YanBasic Immune System of Plants, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Hirofumi NakagamiBasic Immune System of Plants, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Akira MineLaboratory of Plant Pathology, Graduate School of Agriculture, Kyoto University, Kyoto, Japan. mine.akira.8c@kyoto-u.ac.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bioluminescence tagging has gained popularity as an effective tool for investigating infection processes of phytopathogenic bacteria. A critical consideration in employing this approach is to minimize the impact of the genetically introduced luciferase genes on bacterial fitness, while maximizing the intensity and stability of bioluminescence. Recently, the pBJ vector series was developed as all-in-one system for bioluminescence tagging in a wide range of Pseudomonadota, including the phytopathogenic bacterium Pseudomonas syringae pv. tomato DC3000 (Pto). The pBJ vectors enable inducible transposition of the luxCDABE luciferase operon, derived from Photorhabdus luminescens, into a specific and neutral genomic location via Tn7 transposon. The resulting bioluminescent Pto strain, termed Pto-lux, emits stable and strong bioluminescence while maintaining bacterial fitness during plant infection. Moreover, bioluminescence-based assays using Pto-lux enable accurate quantification of in planta bacterial titers across diverse host plants, with a dynamic range of four orders of magnitude. In this chapter, we present detailed protocols for the bioluminescence-based bacterial growth assays in Arabidopsis thaliana and Marchantia polymorpha.

Indexed as

Luminescent MeasurementsPlant DiseasesPseudomonas syringaeArabidopsisDNA Transposable ElementsPhotorhabdusSolanum lycopersicumDNA Transposable ElementsArabidopsis thalianaBacterial virulenceBioluminescenceluxCDABEMarchantia polymorphaPlant-bacteria interactionsPlant immunityPseudomonas syringae

Identifiers

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.