Evidence map›Paper›PMID 41640389›Full record

ArticleEcology and evolution2026

Passive Acoustic Data as Phenological Distributions: Uncovering Signals of Temporal Ecology.

Mary K Clapp, Morgan W Tingley, Damon B Lesmeister, Scott A Gremel, Jason I Ransom, Mandy L Holmgren, Rodney B Siegel

Abstract read
In one paragraph

Article in Ecology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Mary K ClappThe Institute for Bird Populations Petaluma California USA.ORCID https://orcid.org/0000-0001-5311-4720
Morgan W TingleyEcology and Evolutionary Biology University of California-Los Angeles Los Angeles California USA.ORCID https://orcid.org/0000-0002-1477-2218
Damon B LesmeisterUSDA Forest Service Pacific Northwest Research Station Corvallis Oregon USA.ORCID https://orcid.org/0000-0003-1102-0122
Scott A GremelNational Park Service Sedro-Woolley WA USA.
Jason I RansomNational Park Service Sedro-Woolley WA USA.
Mandy L HolmgrenThe Institute for Bird Populations Petaluma California USA.
Rodney B SiegelThe Institute for Bird Populations Petaluma California USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Passive Acoustic Monitoring (PAM) is an increasingly common method for monitoring birds and other sound-producing organisms at scale, but methods that digest these data streams into ecological insight remain underdeveloped. Specifically, using PAM and classification algorithms powered by artificial intelligence (AI) to uncover the phenology of vocal animals is an emerging use of these data but currently lacks standardized, repeatable methods with verified connections to biological phenomena. Here, we articulate specific hypotheses regarding the relationship between avian vocal activity and phenological events, and present a flexible, reproducible methodological pipeline for quantifying avian vocal phenology from PAM data. We applied our pipeline to 18,568 h of audio from 185 recording sites across Olympic National Park, USA. We processed acoustic data through an AI species classifier (BirdNET), then filtered the output using species-specific precision thresholds established through expert review to minimize false positives. For 25 species representing diverse migratory strategies across two elevational strata, we used hierarchical generalized additive models (HGAMs) to estimate daily probabilities of vocal activity from which we extracted standardized "phenometrics" describing the timing, duration, and shape of vocal activity curves. PAM-derived patterns of phenometrics broadly supported expectations, showing promise for future expansion of these methods. Resident species generally exhibited earlier and longer vocal periods than migratory species, and birds at mid-elevations showed delayed and shortened vocal phenology relative to lower elevations. Many species displayed bimodal vocal patterns, with secondary peaks 30-50 days after initial peaks. These generalizable patterns of vocal phenology likely cue transitions in various stages of the avian breeding cycle. Late-season vocal activity, especially in irruptive and resident species, highlighted the method's capacity to capture ecological transitions beyond the breeding season, but robust inferences require further ground-truthing. This study advances the use of PAM for phenological research, offering outputs that can inform long-term monitoring and detect phenological shifts in response to environmental change. We make recommendations for methodological and technological advancement, and highlight the need for studies that integrate PAM data and field-based observation to further strengthen the links between observed phenometrics and confirmed biological states of vocal organisms.

Indexed as

acoustic datahierarchical generalized additive modelsOlympic National Parkpassive acoustic dataphenologyvocal activity

Identifiers

PMID41640389
PMCPMC12865506

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.