Evidence map›Paper›PMID 41639734›Full record

ArticleRespiratory research2026

Artificial intelligence, machine learning-based automated fibrosis quantification in preclinical models of pulmonary fibrosis.

Benjamin Roop, Nery Matias Calmo, Ashley Bass, Sarita Berigei, Rachel Knipe, Daniela Santos, Amalia DeCoursey, Gail Lee, Scott Turner, Markus Herrmann and 2 more

Abstract read
In one paragraph

Article in Respiratory research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Benjamin Roop *Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Nery Matias Calmo *Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Ashley BassDivision of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Sarita BerigeiDivision of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Rachel KnipeDivision of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Daniela SantosDivision of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Amalia DeCourseyDivision of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Gail LeePLIANT Therapeutics, South San Francisco, CA, USA.
Scott TurnerPLIANT Therapeutics, South San Francisco, CA, USA.
Markus HerrmannDepartment of Pathology, Massachusetts General Hospital, Boston, MA, USA.
Sreyankar Nandy *Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA.
Lida Hariri *Division of Pulmonary and Critical Care Medicine, Massachusetts General Hospital, MA, Boston, USA. lhariri@mgh.harvard.edu.

Funding

Role and regulation of vascular permeability in pulmonary fibrosisK08HL140175 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI KNIPE, RACHEL S · 2018 to 2022
$864k
Quantitative Optical Imaging Biomarkers of Interstitial Lung DiseaseK25HL169846 · NHLBI · MASSACHUSETTS GENERAL HOSPITAL · PI Sreyankar Nandy · 2024 to 2026
$560k
NHLBI NIH HHS K08HL140175NHLBI NIH HHS K23HL132120,R01HL152075, R01HL169225NHLBI NIH HHS K25HL169846
6 · The paper itself

Abstract

backgroundPrecise, quantitative assessment of disease features on histological images from preclinical models is essential for therapeutic development in diseases such as pulmonary fibrosis. However, current histological fibrosis scoring methods, such as Ashcroft Scoring have several limitations, including high time and labor requirements by expert pathologist readers, subjective semi-quantitative assessment and interobserver variability. The goal of this study was to assess the feasibility of a supervised AI/ML-based framework for automated, rapid, objective quantification of fibrosis content and spatial distribution in histology slides obtained from a variety of preclinical fibrosis models.

methodsLung histology slides stained with Masson’s trichrome were obtained from 194 individual mice from two independent cohorts of preclinical mouse models of pulmonary fibrosis. A supervised AI/ML algorithm was trained, validated and independently tested to automatically detect, segment and quantify fibrosis compared against independent Ashcroft scoring by an expert pathologist reader. Spatial distribution of AI/ML-segmented fibrosis patterns were compared across histology images.

resultsAI/ML-based fibrosis quantification demonstrated strong correlation with Ashcroft score, both in the validation cohort (Spearman ρ = 0.85, CI: 0.72–0.92), and in the independent, de novo test cohort (Spearman ρ = 0.89, CI: 0.84–0.93) with rapid assessment time (~ 1.5 times faster). Additionally, Ripley’s K analysis revealed differences in spatial distribution of AI-segmented fibrosis patterns among samples with similar Ashcroft scores and overall fibrosis content.

conclusionsThe AI/ML framework developed and independently validated in this study provides a robust, computationally-efficient method for precise, user-friendly, objective measurement of fibrosis content and spatial distribution, which would have major utility in preclinical therapeutic trials and investigations of disease pathogenesis.

Indexed as

Artificial IntelligenceDisease Models, AnimalLungMachine LearningPulmonary FibrosisAnimalsFeasibility StudiesFemaleIntelligent SystemsMaleMiceMice, Inbred C57BLReproducibility of ResultsArtificial intelligenceAshcroft scoreBleomycinMachine learningPulmonary fibrosis

Identifiers

PMID41639734
PMCPMC12961772

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.