Evidence map›Paper›PMID 41639599›Full record

ArticleNature communications2026

Metabolic engineering of doxorubicin biosynthesis through P450-redox partner optimization and structural analysis of DoxA.

Arina Koroleva, Erika Artukka, Keith Yamada, Sean A Newmister, Ralph J Harte, Hannah Boesger, Mikael Londen, Jacob N Sanders, Heli Tirkkonen, Matti Kannisto and 13 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Arina Koroleva *Department of Life Technologies, University of Turku, Turku, Finland.ORCID 0000-0002-0660-0408
Erika Artukka *Department of Life Technologies, University of Turku, Turku, Finland.
Keith Yamada *Department of Life Technologies, University of Turku, Turku, Finland.ORCID 0000-0002-7732-4041
Sean A Newmister *Life Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-9623-7779
Ralph J HarteLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0009-0000-4563-016X
Hannah BoesgerLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0002-5634-369X
Mikael LondenDepartment of Life Technologies, University of Turku, Turku, Finland.
Jacob N SandersDepartment of Chemistry, University of California, Berkeley, CA, USA.ORCID 0000-0002-2196-4234
Heli TirkkonenDepartment of Life Technologies, University of Turku, Turku, Finland.ORCID 0000-0002-9913-226X
Matti KannistoDepartment of Life Technologies, University of Turku, Turku, Finland.
Rosan C M KuinDepartment of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, The Netherlands.ORCID 0000-0003-3335-0464
Mandy HulstInstitute of Biology, Leiden University, Sylviusweg, Leiden, The Netherlands.ORCID 0000-0003-3945-3413
Rongbin WangDepartment of Life Technologies, University of Turku, Turku, Finland.ORCID 0000-0001-6428-2586
Ester LeskinenDepartment of Life Technologies, University of Turku, Turku, Finland.
Morgane BarillecDepartment of Life Technologies, University of Turku, Turku, Finland.
Jarmo NiemiDepartment of Life Technologies, University of Turku, Turku, Finland.ORCID 0000-0002-7447-8379
Gilles P van WezelInstitute of Biology, Leiden University, Sylviusweg, Leiden, The Netherlands.ORCID 0000-0003-0341-1561
Jacques NeefjesDepartment of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, The Netherlands.ORCID 0000-0001-6763-2211
S Eric NyboDepartment of Pharmaceutical Sciences, College of Pharmacy, Ferris State University, Big Rapids, MI, USA.ORCID 0000-0001-7884-7787
Kendall N HoukDepartment of Chemistry, University of California, Berkeley, CA, USA.ORCID 0000-0002-8387-5261
David H ShermanLife Sciences Institute, University of Michigan, Ann Arbor, MI, USA.ORCID 0000-0001-8334-3647
Robbert Q KimDepartment of Cell and Chemical Biology, Leiden University Medical Centre, Leiden, The Netherlands.ORCID 0000-0003-1834-8673
Mikko Metsä-KeteläDepartment of Life Technologies, University of Turku, Turku, Finland. mianme@utu.fi.ORCID 0000-0003-3176-2908

Funding

Academy of Finland (Suomen Akatemia) 340013Academy of Finland (Suomen Akatemia) 354998Novo Nordisk Fonden (Novo Nordisk Foundation) NNF19OC0057511
6 · The paper itself

Abstract

Doxorubicin, a widely used chemotherapy drug, is produced by Streptomyces peucetius ATCC27952. The biosynthesis relies on the cytochrome P450 monooxygenase DoxA, which catalyzes three consecutive late-stage oxidation steps. However, conversion from daunorubicin to doxorubicin is inefficient, necessitating semi-synthetic industrial manufacturing. Here, we address key limitations in DoxA catalysis. We identify the natural redox partners ferredoxin Fdx4 and ferredoxin reductase FdR3 by transcriptomic analysis. We discovered the vicinal oxygen chelate family protein DnrV to prevent product inhibition by binding doxorubicin. Structural analysis of DoxA and density functional theory (DFT) calculations reveal that inefficient C14 hydroxylation results from the unfavorable anti-conformation of the methyl ketone side chain of daunorubicin. We harness these advances for rational strain engineering, leading to an 180% increase in doxorubicin yields and an improved production profile. This study provides singular insights into enzymatic constraints in anthracycline biosynthesis and facilitates cost-effective manufacturing to meet the growing global demand for doxorubicin.

Indexed as

Bacterial ProteinsCytochrome P-450 Enzyme SystemDoxorubicinMetabolic EngineeringStreptomycesAntibiotics, AntineoplasticDaunorubicinFerredoxinsHydroxylationOxidation-ReductionAntibiotics, AntineoplasticBacterial ProteinsCytochrome P-450 Enzyme SystemDaunorubicinDoxorubicinFerredoxins

Identifiers

PMID41639599
PMCPMC12979805

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.