Evidence map›Paper›PMID 41638911›Full record

ArticleGenes & development2026

Multiomic analysis of clonal development reveals new regulators of leukemic cell growth.

Gracia Bonilla, Alexander Morris, Sharmistha Kundu, Anthony DuCasse, Grace Kirkpatrick, Jelena Milosevic, Nathan E Jeffries, Kashish Chetal, Emma E Yvanovich, Ting Zhao and 8 more

Abstract read
In one paragraph

Article in Genes & development, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors.

Gracia BonillaDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Alexander MorrisDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Sharmistha KunduDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Anthony DuCasseDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Grace KirkpatrickDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Jelena MilosevicCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Nathan E JeffriesCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Kashish ChetalDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Emma E YvanovichCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Ting ZhaoCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Jun XiaCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Rana BarghoutCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
David ScaddenCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Michael K MansourHarvard Stem Cell Institute, Cambridge, Massachusetts 02138, USA.
Robert E KingstonDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
David B SykesCenter for Regenerative Medicine, Massachusetts General Hospital, Boston, Massachusetts 02114, USA.
Francois E MercierDepartment of Medicine, McGill University, Montreal, Quebec H4A 3J1, Canada.
Ruslan I SadreyevDepartment of Molecular Biology, Massachusetts General Hospital, Boston, Massachusetts 02114, USA; sadreyev@molbio.mgh.harvard.edu.

Funding

ROLE OF DIETARY CONSTITUENTS ON GENE EXPRESSION IN INTESTINAL EPITHELIUMP30DK040561 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI CHRISTOPHER P DUGGAN · 1994 to 2026
$31.6M
NIDDK NIH HHS P30 DK040561
6 · The paper itself

Abstract

Mechanisms driving the increase in cell growth in developing leukemia are not fully understood. We focused on epigenomic regulation of this process by analyzing the changes of chromatin marks and gene expression in leukemic cell clones as they progressed toward increased proliferation in a mouse model of acute myeloid leukemia (AML). This progression was characterized by gradual modulation of chromatin states and gene expression across the genome, with a surprising preferential trend of reversing the prior changes associated with the origins of leukemia. Our analyses of this modulation in independently developing clones predicted a small set of potential growth regulators whose transcriptomic and epigenomic progression was consistent between clones and maintained both in vivo and ex vivo. We selected three of these genes as candidates (

Indexed as

Gene Expression Regulation, LeukemicLeukemia, Myeloid, AcuteAnimalsCell Line, TumorCell ProliferationChromatinClone CellsDNA-Binding ProteinsHomeodomain ProteinsHumansMiceMultiomicsTranscription FactorsChromatinDNA-Binding ProteinsHomeodomain ProteinsTranscription Factorsacute myeloid leukemiacell growth regulationchromatin modificationsclonal evolutionepigenetic factorsepigenome dynamicsPolycomb group proteins

Identifiers

PMID41638911
PMCPMC13041715

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.