Evidence map›Paper›PMID 41637453›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Metabolite control of enzyme activity links stress to biosynthetic regulation.

Wilhelmina van de Ven, Manhoi Hur, María Fernanda Gómez-Méndez, Jingzhe Guo, Haiyan Ke, Raisul Awal Mahmood, Sunghwan Kim, Thomas D Sharkey, Katayoon Dehesh

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Wilhelmina van de VenDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.ORCID 0000-0001-8709-7412
Manhoi Hur *Department of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.
María Fernanda Gómez-MéndezDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.ORCID 0000-0002-2107-5875
Jingzhe GuoDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.
Haiyan KeDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.ORCID 0000-0001-9365-7922
Raisul Awal MahmoodDepartment of Chemistry, Kyungpook National University, Daegu 41566, Republic of Korea.
Sunghwan KimDepartment of Chemistry, Kyungpook National University, Daegu 41566, Republic of Korea.
Thomas D SharkeyDepartment of Biochemistry and Molecular Biology, Michigan State University, Department of Energy Plant Research Laboratory, East Lansing, MI 48824.ORCID 0000-0002-4423-3223
Katayoon DeheshDepartment of Botany and Plant Sciences, Institute of Integrative Genome Biology, University of California, Riverside, CA 92521.ORCID 0000-0002-9312-8032

Funding

HHS | NIH | National Institute of General Medical Sciences (NIGMS) R01GM107311-8NSF (NSF) 2022495NSF (NSF) 2104365
6 · The paper itself

Abstract

Cells must continuously adjust metabolic output to maintain homeostasis under changing environmental conditions, yet the mechanisms that enable rapid and reversible control of pathway activity remain largely unknown. The methylerythritol phosphate (MEP) pathway, of bacterial origin and conserved in plastid-bearing eukaryotes, including plants and apicomplexan parasites, produces isoprenoid precursors essential for growth and stress adaptation. Here, we identify methylerythritol cyclodiphosphate (MEcPP) as a dual-function metabolite that serves both as a biosynthetic intermediate and a direct modulator of enzyme activity. Genetic perturbations and high light stress revealed step-specific MEcPP accumulation independent of transcriptional regulation. Biochemical and protease-protection assays showed that MEcPP destabilizes and inhibits methylerythritol cytidylyltransferase (MCT) while modestly stabilizing hydroxymethylbutenyl diphosphate synthase (HDS). Molecular docking analyses indicate that MEcPP interacts directly with the MCT catalytic site, displacing the natural substrate and thereby attenuating enzyme activity, suggesting a competitive, feedback-like mechanism of metabolic control. These results define MEcPP as a metabolic feedback signal that translates stress-induced changes into targeted enzymatic control. This mechanism illustrates how pathway intermediates dynamically coordinate biosynthetic activity with environmental cues, representing a broadly conserved strategy for metabolite-driven control of cellular metabolism.

Indexed as

ErythritolStress, PhysiologicalSugar PhosphatesAlkyl and Aryl TransferasesEnzymesMolecular Docking SimulationNucleotidyltransferasesAlkyl and Aryl TransferasesEnzymesErythritolhydroxymethylbutenyl 4-diphosphate synthasemethyl-D-erythritol 2,4-cyclodiphosphateNucleotidyltransferasesSugar Phosphatesisoprenoid biosynthesisMEcPPMEP pathwaymetabolic feedback regulationplastidial stress response

Identifiers

PMID41637453
PMCPMC12890928

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.