Evidence map›Paper›PMID 41637451›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

High-sensitivity, protein-independent detection of dsDNA sequences.

Jiaqi Yan, Rajendra Bhadane, Wentao Xu, Meixin Ran, Xiaochao Ma, Yuanqiang Li, Kevin Jahnke, Xiaodong Ma, Outi M H Salo-Ahen, Mauri A Kostiainen and 2 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. High-sensitivity, protein-independent detection of dsDNA sequences.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Jiaqi YanSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.
Rajendra BhadaneInstitute of Biomedicine, University of Turku, Turku 20520, Finland.
Wentao XuSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.
Meixin RanPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.
Xiaochao MaPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.
Yuanqiang LiPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.
Kevin JahnkeSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.ORCID 0000-0001-7311-6993
Xiaodong MaPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.
Outi M H Salo-AhenPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.
Mauri A KostiainenDepartment of Bioproducts and Biosystems, Aalto University, Aalto FI-00076, Finland.
David A WeitzSchool of Engineering and Applied Sciences, Harvard University, Cambridge, MA 02138.ORCID 0000-0001-6678-5208
Hongbo ZhangPharmaceutical Sciences Laboratory, Faculty of Science and Engineering, Åbo Akademi University, Turku 20520, Finland.ORCID 0000-0002-1071-4416

Funding

Manipulation of innate immunity by Polyomavirus T antigensR01AI153156 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI PIPAS, JAMES M · 2020 to 2024
$2.0M
NIH/Uinversity of Pittsburgh R01AI153156Research Council of Finland (AKA) 347897
6 · The paper itself

Abstract

Current methodologies for detecting the sequence of double-stranded DNA (dsDNA) require amplifying and denaturing the target into single-stranded DNA (ssDNA) to enable sequence detection through Watson-Crick base pairing. However, these approaches are limited by the risks of nonspecific amplification, reliance on complex, temperature-sensitive protein enzymes, and harsh reaction conditions, such as in strong base or acidic environments. Here, we introduce a dsDNA detection platform that integrates a peptide nucleic acid (PNA) as the dsDNA denaturation agent, with multicomponent deoxyribozyme as the ssDNA detection tool, in a droplet-based system. This protein- and amplification-free method offers single-nucleotide resolution, detects down to a single dsDNA molecule, and delivers results within 1 h at room temperature. This work introduces a conceptually unique approach, that may be useful for both diagnostics and therapeutics.

Indexed as

DNASequence Analysis, DNABase SequenceDNA, CatalyticDNA, Single-StrandedNucleic Acid DenaturationPeptide Nucleic AcidsDNADNA, CatalyticDNA, Single-StrandedPeptide Nucleic Acidsdouble-stranded DNAmicrofluidicsmulticomponent deoxyribozymepeptide nucleic acidsequence detection

Identifiers

PMID41637451
PMCPMC12890859

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.