Evidence map›Paper›PMID 41636474›Full record

ArticleStatistics in medicine2026

A Statistical Framework for Measuring Reproducibility and Replicability of High-Throughput Experiments From Multiple Sources.

Monia Ranalli, Yafei Lyu, Hillary Koch, Qunhua Li

Abstract read
In one paragraph

Article in Statistics in medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Monia RanalliDepartment of Statistics, Sapienza University of Rome, Rome, Italy.ORCID https://orcid.org/0000-0001-7193-8803
Yafei LyuBioinformatics and Genomics Graduate Program, The Huck Institute of the Life Science, Pennsylvania State University, University Park, Pennsylvania, USA.
Hillary KochDepartment of Statistics, Pennsylvania State University, University Park, Pennsylvania, USA.
Qunhua LiDepartment of Statistics, Pennsylvania State University, University Park, Pennsylvania, USA.ORCID https://orcid.org/0000-0003-0675-7648

Funding

Statistical methods for improving reproducibility and utility of sequencing dataR01GM109453 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI LI, QUNHUA · 2013 to 2022
$2.3M
Statistical methods for differential peak detection in Hi-C dataF31HG010574 · NHGRI · PENNSYLVANIA STATE UNIVERSITY, THE · PI KOCH, HILLARY · 2019 to 2020
$60k
NHGRI NIH HHS F31 HG010574NIGMS NIH HHS R01 GM109453NIH HHS F31HG010574NIH HHS R01GM109453
6 · The paper itself

Abstract

Replication is essential to reliable and consistent scientific discovery in high-throughput experiments. Quantifying the replicability of scientific discoveries and identifying sources of irreproducibility have become important tasks for quality control and data integration. In this work we introduce a novel statistical model to measure the reproducibility and replicability of findings from replicate experiments in multi-source studies. Using a nested copula mixture model that characterizes the interdependence between replication experiments both across and within sources, our method quantifies reproducibility and replicability of each candidate simultaneously in a coherent framework. Through simulation studies, an ENCODE ChIP-seq dataset and a SEQC RNA-seq dataset, we demonstrate the effectiveness of our method in diagnosing the source of discordance and improving the reliability of scientific discoveries.

Indexed as

High-Throughput Nucleotide SequencingHigh-Throughput Screening AssaysModels, StatisticalComputer SimulationHumansReproducibility of Resultscopulahigh‐throughput experimentirreproducible discovery ratemixture modelsreplicabilityreproducibility

Identifiers

PMID41636474
PMCPMC12871010

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.