Evidence map›Paper›PMID 41634863›Full record

ArticleAnimal microbiome2026

Compost fermented with thermophilic Bacillaceae reduces heat stress-induced mortality in laying hens through gut microbial modulation.

Yudai Inabu, Hirokuni Miyamoto, Hideyuki Takahashi, Tamotsu Kato, Shigeharu Moriya, Atsushi Kurotani, Haruki Yamano, Teruno Nakaguma, Naoko Tsuji, Chitose Ishii and 8 more

Abstract read
In one paragraph

Article in Animal microbiome, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Yudai InabuKuju Agricultural Research Center, Graduate School of Agriculture, Kyushu University, Oita, 878-0201, Japan.
Hirokuni MiyamotoGraduate School of Horticulture, Chiba University, Matsudo, 271‑8501, Japan. hirokuni.miyamoto@riken.jp.
Hideyuki TakahashiKuju Agricultural Research Center, Graduate School of Agriculture, Kyushu University, Oita, 878-0201, Japan. takahashi.hideyuki.990@m.kyushu-u.ac.jp.
Tamotsu KatoRIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045, Japan.
Shigeharu MoriyaRIKEN, Center for Advanced Photonics, Wako, Saitama, 351-0198, Japan.
Atsushi KurotaniResearch Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-0856, Japan.
Haruki YamanoKuju Agricultural Research Center, Graduate School of Agriculture, Kyushu University, Oita, 878-0201, Japan.
Teruno NakagumaGraduate School of Integrated Sciences for Life, Hiroshima University, Hiroshima, Japan.
Naoko TsujiSermas, Co., Ltd., Chiba, 271-8501, Japan.
Chitose IshiiRIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045, Japan.
Makiko MatsuuraGraduate School of Horticulture, Chiba University, Matsudo, 271‑8501, Japan.
Satoshi WadaResearch Center for Agricultural Information Technology, National Agriculture and Food Research Organization, Tsukuba, Ibaraki, 305-0856, Japan.
Takashi SatohDivision of Hematology, Kitasato University School of Allied Health Sciences, Sagamihara, Kanagawa, 252-0373, Japan.
Motoaki UdagawaKeiyo Gas Energy Solution Co., Ltd., Ichikawa, Chiba, 272-0033, Japan.
Hisashi MiyamotoMiroku Co., Ltd., Kitsuki, Oita, 873-0021, Japan.
Jun KikuchiRIKEN Center for Sustainable Resource Science, Yokohama, Kanagawa, 230-0045, Japan.
Hiroaki KodamaGraduate School of Horticulture, Chiba University, Matsudo, 271‑8501, Japan.
Hiroshi OhnoRIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, 230-0045, Japan. hiroshi.ohno@riken.jp.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHeat stress (HS) adversely affects poultry health and productivity. Recently, it has been suggested that the gut microbiota may play a role in host resilience to HS, although the details of its mechanism remain unclear. Here, the heat tolerance-related effects of dietary supplementation of compost fermented by the thermophile Bacillaceae were explored using a laying hen model (601,474 hens in total).

resultsIn a field study conducted during the summer (maximum temperatures of approximately 35 °C) in eleven hen houses, oral administration of the compost extract resulted in a statistically significant reduction in mortality. Difference-in-differences analysis revealed that the abundances of the genera Lachnospiraceae NK3A20 group, Enterococcus, Ruminococcus 2, Blautia, Lactobacillus, Christensenellaceae R-7 group, and Tyzzerella 4 were significantly increased by compost administration, whereas those of the Prevotellaceae NK3B31 group, Prevotella 9, Romboutsia, Turicibacter, and Escherichia-Shigella were significantly reduced. In addition, to evaluate the relationship between short-chain fatty acids (SCFAs) metabolic profiles and the gut bacterial population, factor analysis combined with feature selection based on multiple machine learning (ML) algorithms was performed. The resulting optimal structural equation model suggested that compost administration led to increases in the levels of the SCFAs acetate and butyrate, as well as decreases in the levels of the genera Romboutsia and Turicibacter.

conclusionOral administration of thermophile-fermented compost to laying hens alleviated HS-induced mortality. Integrative computational evaluations further revealed that the reduction in mortality was linked to structural changes in the gut microbiota composition and SCFA concentrations.

Indexed as

Faecal microbiotaHeat stressThermophile

Identifiers

PMID41634863
PMCPMC12870368

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.