Evidence map›Paper›PMID 41634413›Full record

ArticleNature genetics2026

Fast and flexible joint fine-mapping of multiple traits via the Sum of Single Effects model.

Yuxin Zou, Peter Carbonetto, Dongyue Xie, Gao Wang, Matthew Stephens

Abstract read
In one paragraph

Article in Nature genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 1 synthesis or guideline pooled it.

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  18. fSuSiE enables fine-mapping of QTLs from genome-scale molecular profiles.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Yuxin ZouDepartment of Statistics, University of Chicago, Chicago, IL, USA.ORCID http://orcid.org/0000-0001-9816-5847
Peter CarbonettoDepartment of Human Genetics, University of Chicago, Chicago, IL, USA.
Dongyue XieDepartment of Statistics, University of Chicago, Chicago, IL, USA.
Gao WangThe Gertrude H. Sergievsky Center and Department of Neurology, Columbia University, New York City, NY, USA. wang.gao@columbia.edu.ORCID http://orcid.org/0000-0001-9336-402X
Matthew StephensDepartment of Statistics, University of Chicago, Chicago, IL, USA. mstephens@uchicago.edu.ORCID http://orcid.org/0000-0001-5397-9257

Funding

Genome analysis: statistical methods and applicationsR01HG002585 · NHGRI · UNIVERSITY OF WASHINGTON · PI MATTHEW STEPHENS · 2002 to 2026
$8.4M
Multiomics data integration methods to discover putative causal variants, genes and patient heterogeneity for Alzheimers diseaseR01AG076901 · NIA · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI Gao Wang · 2023 to 2026
$2.4M
NHGRI NIH HHS R01 HG002585NIA NIH HHS R01 AG076901U.S. Department of Health & Human Services | NIH | National Human Genome Research Institute (NHGRI) R01HG002585U.S. Department of Health & Human Services | NIH | National Institute on Aging (U.S. National Institute on Aging) R01AG076901
6 · The paper itself

Abstract

We introduce mvSuSiE, a multitrait fine-mapping method, to identify putative causal variants from genetic association data (individual-level or summary). mvSuSiE learns patterns of shared genetic effects from data, and exploits these patterns to improve power to identify causal single nucleotide polymorphisms (SNPs). Comparisons on simulated data show that mvSuSiE is competitive in speed, power and precision with existing multitrait methods, and uniformly improves over single-trait fine-mapping (Sum of Single Effects) performed separately for each trait. We applied mvSuSiE to jointly fine-map 16 blood cell traits using data from the UK Biobank. By jointly analyzing traits and modeling heterogeneous effect-sharing patterns, we identified a substantially larger number of causal SNPs (>3,000) than single-trait fine-mapping and achieved narrower credible sets. mvSuSiE also more comprehensively characterized how genetic variants affect blood cell traits; 68% of causal SNPs showed significant effects across more than one blood cell type.

Indexed as

Chromosome MappingModels, GeneticQuantitative Trait LociComputer SimulationGenome-Wide Association StudyHumansPhenotypePolymorphism, Single NucleotideUK Biobank

Identifiers

PMID41634413
PMCPMC12900646

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.