ArticleJournal of molecular modeling2026
Analysis of molecular conjugation influence on color characteristics of indigo compounds.
Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
1 citing paper in PubMed.
- Study on Thermal Stability, Phase Transition Characteristics, and Pyrolysis Product Distributions of Long-Chain n-Alkanes (C12-C15).Molecules (Basel, Switzerland) · 2026Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
6 authors.
Funding
Abstract
contextIndigo dyes are historically significant and possess a unique π-conjugated core, making them valuable for both traditional pigments and emerging applications in organic electronics. A fundamental challenge is understanding how subtle molecular modifications, particularly substituent effects, quantitatively influence their conjugation extent and resulting color properties. This study systematically investigates the parent indigo and three N, N'-substituted derivatives (phenyl, ethyl, and vinyl) to elucidate the precise relationship between molecular structure, electronic properties, and visible light absorption. Density functional theory (DFT) and Time-dependent DFT (TD-DFT) calculations reveal how substituents modulate the HOMO-LUMO gap and intramolecular interactions, directly correlating with calculated absorption wavelengths (628 to 807 nm) and predicted colors (medium blue to green-cyan) via complementary color theory. These findings provide a quantitative framework for designing indigo-based dyes with targeted optical properties, including near-infrared absorption.
methodsDensity functional theory (DFT) and time-dependent DFT (TD-DFT) calculations were performed. Ground-state geometry optimizations and frequency calculations were carried out using the B3LYP-D3(BJ) functional with the def2TZVP basis set. Excited-state calculations employed the CAM-B3LYP-D3(BJ)/def2TZVP level, with the IEFPCM solvation model simulating aqueous conditions. The Multiwfn 3.8 and VMD 1.9.3 software packages were used for interaction region indicator (IRI) analysis, electrostatic potential (ESP) mapping, electron density difference (EDD) analysis, hole-electron analysis, and color prediction based on absorption spectra.
Indexed as
Identifiers
41632303What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.