Evidence map›Paper›PMID 41632303›Full record

ArticleJournal of molecular modeling2026

Analysis of molecular conjugation influence on color characteristics of indigo compounds.

Zengbo Ke, Jiahao Zhang, Hao Li, Xiaolong Li, Chengfang Qiao, Youying Di

Abstract read
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Article in Journal of molecular modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zengbo KeCollege of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo, Shaanxi, 726000, China. kezengbo2021@163.com.
Jiahao ZhangInner Mongolia Key Laboratory of Chemistry and Physics of Rare Earth Materials, School of Chemistry and Chemical Engineering, Inner Mongolia University, Hohhot, 010021, China. 13087552085@126.com.
Hao LiCollege of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo, Shaanxi, 726000, China.
Xiaolong LiCollege of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo, Shaanxi, 726000, China.
Chengfang QiaoCollege of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo, Shaanxi, 726000, China. xiaoqiaoqcf@126.com.
Youying DiCollege of Chemical Engineering and Modern Materials, Shaanxi Key Laboratory of Comprehensive Utilization of Tailings Resources, Shangluo University, Shangluo, Shaanxi, 726000, China.

Funding

Shangluo University Doctoral Research Development Fund Project 17SKY012Shangluo University Doctoral Research Development Fund Project 24SKY002the General Special Scientific Research Project of Education Department of Shaanxi Provincial Gorvernment 23JK0425the National Natural Science Foundation of China 22173056the Nature Science Basic Research Program of Shannxi 2025SYS-SYSZD-063
6 · The paper itself

Abstract

contextIndigo dyes are historically significant and possess a unique π-conjugated core, making them valuable for both traditional pigments and emerging applications in organic electronics. A fundamental challenge is understanding how subtle molecular modifications, particularly substituent effects, quantitatively influence their conjugation extent and resulting color properties. This study systematically investigates the parent indigo and three N, N'-substituted derivatives (phenyl, ethyl, and vinyl) to elucidate the precise relationship between molecular structure, electronic properties, and visible light absorption. Density functional theory (DFT) and Time-dependent DFT (TD-DFT) calculations reveal how substituents modulate the HOMO-LUMO gap and intramolecular interactions, directly correlating with calculated absorption wavelengths (628 to 807 nm) and predicted colors (medium blue to green-cyan) via complementary color theory. These findings provide a quantitative framework for designing indigo-based dyes with targeted optical properties, including near-infrared absorption.

methodsDensity functional theory (DFT) and time-dependent DFT (TD-DFT) calculations were performed. Ground-state geometry optimizations and frequency calculations were carried out using the B3LYP-D3(BJ) functional with the def2TZVP basis set. Excited-state calculations employed the CAM-B3LYP-D3(BJ)/def2TZVP level, with the IEFPCM solvation model simulating aqueous conditions. The Multiwfn 3.8 and VMD 1.9.3 software packages were used for interaction region indicator (IRI) analysis, electrostatic potential (ESP) mapping, electron density difference (EDD) analysis, hole-electron analysis, and color prediction based on absorption spectra.

Indexed as

Color predictionDFTIndigo dyesIRITD-DFT

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.