Evidence map›Paper›PMID 41629799›Full record

ArticleBMC plant biology2026

Comprehensive analysis of IDD family genes and their expression patterns in barley.

Chengxin Yin, Junjuan Li, Wenxing Liu, Jianbin Zeng, Wujun Ma, Xue Feng

Abstract read
In one paragraph

Article in BMC plant biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Chengxin Yin *Provincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China.
Junjuan Li *Provincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China.
Wenxing LiuProvincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China.
Jianbin ZengProvincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China.
Wujun MaProvincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China. w.ma@murdoch.edu.au.
Xue FengProvincial Department of Education, The Characteristic Laboratory of Crop Germplasm Innovation and Application, College of Agronomy, Qingdao Agricultural University, Qingdao, 266109, China. fengxue@qau.edu.cn.

Funding

Joint Funds of the National Natural Science Foundation of China U22A20457Natural Science Foundation of Shandong Province ZR2024MC025Special Fund of Taishan Scholar Program tsqn202507230Young Talent of Lifting engineering for Science and Technology in Shandong, China SDAST2025QTA032
6 · The paper itself

Abstract

backgroundINDETERMINATE DOMAIN (IDD) is a unique C2H2 zinc finger protein subfamily in plants. It has been thoroughly studied in Arabidopsis and is widely involved in the growth and development of various plants and stress response. Following wheat, maize and rice, barley stands as the fourth major cereal crop. In contrast, there are limited studies on the IDD gene family in Hordeum vulgare. Therefore, this study comprehensively identified and analyzed the barley IDD gene family by bioinformatics methods.

resultsA total of 13 HvIDD family genes were detected and classified into three subfamilies. Ten conserved motifs were identified by motif analysis. Through chromosome localization analysis, 13 HvIDD genes were found to be located on multiple chromosomes, of which 4 HvIDDs were found on chromosomes 3 and 4, respectively. In addition, analysis of cis-acting element in promoter revealed a variety of elements, such as O2-site, ARE, LTR, TGA-element and MRE, which play an important role in regulating gene expression. In our study, six miRNAs were predicted to interact with HvIDDs and HvIDD4/5/7/9/13 could regulate 72 genes expression, which enriched in membrane-binding pathways.

conclusionIn summary, these findings provide valuable insights for future functional verification of HvIDDs and contribute to a deeper understanding of the role of HvIDDs in response to stress conditions in barley.

Indexed as

Gene Expression Regulation, PlantGenes, PlantHordeumMultigene FamilyPlant ProteinsMicroRNAsPhylogenyPromoter Regions, GeneticMicroRNAsPlant ProteinsBarley (Hordeum vulgare)Expression patternsIDDRegulatory

Identifiers

PMID41629799
PMCPMC12955319

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.