Evidence map›Paper›PMID 41629344›Full record

ArticleNPJ genomic medicine2026

New insights into neurodevelopmental disorders by whole genome sequencing of 100 families from Italy.

Giovanni Spirito, Sara Trova, Gaia Treves, Khudayar Farmanli, Mariacristina Franzese Canonico, Agata Fant, Stefano Marangoni, Federica Furia, Debora Charrance, Nicola Locci and 21 more

Abstract read
In one paragraph

Article in NPJ genomic medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

31 authors.

Giovanni Spirito *Non-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Sara Trova *Non-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Gaia TrevesNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Khudayar FarmanliCenter for Clinical and Computational Genomics, Non-coding RNAs and RNA-based therapeutics, Fondazione Istituto Italiano di Tecnologia (IIT), Aosta, Italy.
Mariacristina Franzese CanonicoNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Agata FantNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Stefano MarangoniComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Federica FuriaComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Debora CharranceComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Nicola LocciNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Sara GottardoNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Francesca GroppoNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Vittoria PerseghinNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Martina ToscanoNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Erika BibbòNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Serena Donetti DontinPediatric Neuropsychiatry, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy.
Cecilia CargneluttiPediatric Neuropsychiatry, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy.
Mélody ColliardPediatric Neuropsychiatry, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy.
Alessandro RosinaPediatric Neuropsychiatry, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy.
Anna Maria BeoniPsychiatry, Healthcare agency of the Aosta Valley, Aosta, Italy.
Cristina BérardPsychiatry, Healthcare agency of the Aosta Valley, Aosta, Italy.
Alessandro CoppeComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Paolo SerravallePediatrics, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy.
Fabio LanduzziComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Francesco MusacchiaNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Antonio AmorosoNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Remo SangesCenter for Human Technologies, Non-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, Genova, Italy.
Andrea CavalliComputational and Chemical Biology, Italian Institute of Technology, CMP3VdA, Aosta, Italy.
Manuela VecchiNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy. manuela.vecchi@iit.it.
Laure ObinoPediatric Neuropsychiatry, Healthcare agency of the Aosta Valley, Beauregard Hospital, Aosta, Italy. lobino@ausl.vda.it.
Stefano GustincichNon-coding RNAs and RNA-based therapeutics, Italian Institute of Technology, CMP3VdA, Aosta, Italy. stefano.gustincich@iit.it.

Funding

European Regional Development Fund CUPB68H19005520007European Social Fund Plus B65F19001200009European Social Fund Plus J51B24000170002
6 · The paper itself

Abstract

Neurodevelopmental disorders (NDDs) have a strong but largely unexplained genetic basis. Moreover, the genetic architecture of these complex disorders in under-represented communities is poorly studied. We analyzed 110 probands from 100 families (for a total of 298 individuals), using whole genome sequencing (WGS) to identify genetic contributors to NDDs. This study is part of the '5000genomi@VdA' project characterizing Valle d'Aosta (Italy) genomic landscape in health and disease. Probands were stratified into three diagnostic categories: ASD (autism spectrum disorder without intellectual disability), ID (intellectual disability without ASD), and ASD-ID (autism spectrum disorder with comorbid intellectual disability). Following the ACMG guidelines, we identified 32 likely phenotype-causing variants in known NDD-associated genes in 26.4% of the probands. We observed a diagnostic yield gradient, lowest in ASD, intermediate in ASD-ID, and highest in ID. We also identified 42 variants of uncertain significance, 14 of which were located in genes not previously linked to NDDs but relevant to neurodevelopment, and may thus represent new NDD candidate genes. Furthermore, we used Evo 2, an evolutionary constraint-based model, to refine variant interpretation and identify VUS with pathogenic-like signatures. These findings highlight the utility of WGS in exploring the genetic heterogeneity within stratified NDD clinical groups.

Identifiers

PMID41629344
PMCPMC12886966

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.