Evidence map›Paper›PMID 41628244›Full record

ArticleGenetics2026

Genome Database for Vaccinium: a knowledgebase for genetics, genomics, and breeding research.

Jodi L Humann, Sook Jung, Chun-Huai Cheng, Taein Lee, Katheryn Buble, Ping Zheng, Sushan Ru, Massimo Iorizzo, Dorrie Main

Abstract read
In one paragraph

Article in Genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Jodi L HumannDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.ORCID 0000-0002-9575-6710
Sook JungDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.ORCID 0000-0003-3968-2769
Chun-Huai ChengDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.
Taein LeeDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.
Katheryn BubleDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.
Ping ZhengDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.
Sushan RuDepartment of Horticulture, Auburn University, Auburn, AL 36849, United States.
Massimo IorizzoDepartment of Horticultural Science and Plants for Human Health Institute, NC State University, Kannapolis, NC 28081, United States.ORCID 0000-0002-0032-8247
Dorrie MainDepartment of Horticulture, Washington State University, Pullman, WA 99164, United States.ORCID 0000-0002-1162-2724

Funding

National Research Support Project 10Specialty Crop Research InitiativeUSDA Hatch 1014919U.S. Department of Agriculture's National Institute of Food and Agriculture 2022-51181-38449 AND 2019-51181-30015
6 · The paper itself

Abstract

The Genome Database for Vaccinium (GDV, https://www.vaccinium.org/) is a knowledgebase serving the global Vaccinium research community. GDV centralizes genetics, genomics, and breeding data for blueberry, cranberry, bilberry, and lingonberry. Launched in 2011, GDV transforms research data into an integrated resource through data curation, standardization, and value-added analyses that enable cross-study comparisons and knowledge synthesis. GDV houses diverse data types including germplasm records, genetic markers, linkage maps, QTL/GWAS results, traits, genome assemblies, gene annotations, and expression profiles. The database team perform comprehensive analyses including homology searches against protein databases, InterPro domain identification, and synteny analyses between Vaccinium genomes to identify orthologous relationships. These analyses facilitate knowledge transfer within and between species, enabling researchers to leverage findings across the Vaccinium genus. Users access data through intuitive search interfaces and specialized tools for genetic map visualization, genome browsing, metabolic pathway exploration, and sequence similarity searches. The integrated Breeding Information Management System (BIMS) enables breeders to manage private breeding programs as well as accessing public breeding data. Currently containing 46 genome assemblies, over 287,000 genetic markers, 4,328 QTL, and 3.3 million gene models, GDV continues expanding through collaborations with the VacCAP project and international research groups. The database evolves based on community needs and emerging data types, ensuring its continued relevance for advancing Vaccinium research and crop improvement efforts worldwide.

Indexed as

Databases, GeneticGenome, PlantKnowledge BasesPlant BreedingVacciniumBiocurationGenomicsQuantitative Trait LociBIMScultivar developmentgenetic mapsgenomesGWASmarker-assisted selectionQTLRNA-SeqVacciniumVaccinium knowledgebase

Identifiers

PMID41628244
PMCPMC13050211

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.