Evidence map›Paper›PMID 41627763›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2026

Biochemistry of Diplonemids.

Matus Valach, Gertraud Burger, Drahomíra Faktorová, Julius Lukeš, Ingrid Škodová-Sveráková

Abstract read
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In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Matus ValachDepartment of Biochemistry and Robert-Cedergren Centre for Bioinformatics and Genomics, Université de Montréal, Montréal, QC, Canada.ORCID https://orcid.org/0000-0001-8689-0080
Gertraud BurgerDepartment of Biochemistry and Robert-Cedergren Centre for Bioinformatics and Genomics, Université de Montréal, Montréal, QC, Canada.ORCID https://orcid.org/0000-0002-8679-8812
Drahomíra FaktorováInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic.ORCID https://orcid.org/0000-0001-9623-2233
Julius LukešInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic.ORCID https://orcid.org/0000-0002-0578-6618
Ingrid Škodová-SverákováInstitute of Parasitology, Biology Centre, Czech Academy of Sciences, České Budějovice (Budweis), Czech Republic.ORCID https://orcid.org/0000-0002-4004-3377

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Diplonemids are heterotrophic marine flagellates that have attracted attention and interest due to their eccentric mitochondrial genome and gene expression. This has led to the development and optimization of experimental procedures aimed at better understanding of the unusual mitochondrial processes that occur in this group. Here we present a collection of protocols established in the diplonemid type species Paradiplonema papillatum, which range from DNA preparation for direct long-read sequencing of both mitochondrial and nuclear DNA, to isolation of mitochondria and separation of mitochondrial ribosomes, to assays for assessing metabolic functions through measurement of respiration, mitochondrial membrane potential, and peroxide-scavenging activities, as well as tracking metabolic routes via stable-isotope labeling of metabolic intermediates.

Indexed as

EuglenozoaMitochondriaCell FractionationDNA, MitochondrialGenome, MitochondrialIsotope LabelingMembrane Potential, MitochondrialRibosomesDNA, MitochondrialBioenergeticsDiplonemaDiplonemidMitochondriaMitoribosomeNanopore sequencingReactive oxygen speciesRespirationStable-isotope labelingSubcellular fractionation

Identifiers

PMID41627763

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.