Evidence map›Paper›PMID 41627508›Full record

ArticleArchives of microbiology2026

Pangenomics of high-risk international clones in Acinetobacter baumannii identifies distinctive virulence and antimicrobial resistance profiles.

Alma Karen Orozco-Ochoa, Beatriz Quiñones, Bertram G Lee, Jean Pierre González-Gómez, Juan Daniel Lira-Morales, Nohelia Castro-Del Campo, José Benigno Valdez-Torres, Cristóbal Chaidez-Quiroz

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alma Karen Orozco-OchoaLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0003-2514-0651
Beatriz QuiñonesU. S. Department of Agriculture, Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Unit, Albany, CA, USA. beatriz.quinones@usda.gov.ORCID http://orcid.org/0000-0001-5010-9889
Bertram G LeeU. S. Department of Agriculture, Agricultural Research Service, Western Regional Research Center, Produce Safety and Microbiology Unit, Albany, CA, USA.ORCID http://orcid.org/0000-0003-2962-3650
Jean Pierre González-GómezLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0003-2994-4358
Juan Daniel Lira-MoralesLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0002-7558-3963
Nohelia Castro-Del CampoLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0002-0738-492X
José Benigno Valdez-TorresLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0002-9155-6981
Cristóbal Chaidez-QuirozLaboratorio Nacional para la Investigación en Inocuidad Alimentaria (LANIIA), Centro de Investigación en Alimentación y Desarrollo (CIAD), A.C., Culiacán, Sinaloa, Mexico.ORCID http://orcid.org/0000-0001-5071-8270

Funding

Ciencia de Frontera 2023 Ciencia de Frontera 2023United States Department of Agriculture (USDA), Agricultural Research Service (ARS), CRIS 2030-42000-055-00D
6 · The paper itself

Abstract

The bacterial pathogen Acinetobacter baumannii is an opportunistic and nosocomial causative agent of multidrug resistant infections worldwide. The present study conducted comparative genomic analyses to identify relevant pathogenicity traits in A. baumannii strains from diverse clinical samples and geographical regions in Mexico. Pangenome analysis clustered the strains into four phylogenomic clades, comprising various international clones. Clades I and II strains, predominantly from blood and respiratory infections in the Central region, were significantly associated with the Latin American IC5 clone (P = 0.0002), whereas clade III strains, primarily from diverse samples in the Northwestern region, were significantly associated with the European IC2 clone (P = 0.0030). Virulence determinants implicated in adhesion (ompA, omp38), biofilm formation (pgaA-D, csuA/BABCDE), motility (pil, fim), regulatory systems (bfmRS, barAB, abaR/abaI), iron acquisition (bas, bau), and efflux pump-delivery systems (adeFGH) were identified among the A. baumannii strains, representing all clades and geographical regions. Analysis of intrinsic and acquired antimicrobial resistance revealed that clades I and II strains were significantly correlated with resistance to β-lactamases (blaADC-6, blaOXA-239, blaOXA-65), sulfonamides (sul2), and chloramphenicol (cmlB1) (P = 0.0001). Interestingly, clade III strains, predominantly from the agricultural Northwestern region, exhibited a significant association of broader resistance genes against aminoglycosides (aac(6')-Ib', aph(3')-Ia, armA, aadA), β-lactamases (blaTEM-4, blaADC-25, blaOXA-66), sulfonamides (sul1), tetracyclines (tetA), and macrolides (mphD, msrE) (P = 0.0001). Subsequent characterization of mobile genetic elements indicated genetic plasticity and potential transfer of antimicrobial resistance. Collectively, this fundamental information would enable the improvement of epidemiological surveillance and intervention strategies for A. baumannii.

Indexed as

Acinetobacter baumanniiAcinetobacter InfectionsAnti-Bacterial AgentsDrug Resistance, Multiple, BacterialVirulence FactorsBacterial ProteinsGenome, BacterialGenomicsHumansMexicoMicrobial Sensitivity TestsPhylogenyVirulenceAnti-Bacterial AgentsBacterial ProteinsVirulence FactorsAcinetobacterAntimicrobial resistanceGenomicsInternational clonesMobile genetic elementsVirulence factor

Identifiers

PMID41627508

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.