Evidence map›Paper›PMID 41620656›Full record

ArticleBMC infectious diseases2026

A previously low prevalence Plasmodium falciparum clone expands in an outbreak in the Pacific Coast of South America.

Andrés Cartagenova, Karina Zapata-Berrones, Janeth Boboy, Wilson Cuero, Daniel E Neafsey, Angela M Early, Fabián E Sáenz

Abstract read
In one paragraph

Article in BMC infectious diseases, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Andrés CartagenovaCentro de Investigación para la Salud en América Latina, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Karina Zapata-BerronesCentro de Investigación para la Salud en América Latina, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Janeth BoboyDistrito 08D05 Ministerio de Salud Pública, San Lorenzo, Esmeraldas, Ecuador.
Wilson CueroDistrito 08D01 Ministerio de Salud Pública, Esmeraldas, Ecuador.
Daniel E NeafseyInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Angela M EarlyInfectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA, USA.
Fabián E SáenzCentro de Investigación para la Salud en América Latina, Facultad de Ciencias Exactas y Naturales, Pontificia Universidad Católica del Ecuador, Quito, Ecuador. fsaenz213@puce.edu.ec.

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI EARL, ASHLEE MIRIAM · 2014 to 2024
$66.5M
Genomics and sero-epidemiology of Plasmodium falciparum malaria in a pre-elimination settingR01AI176569 · NIAID · PONTIFICIA UNIVERSIDAD CATOLICA DEL ECUADOR · PI Fabian Ernesto Saenz · 2023 to 2026
$536k
NIH HHS R01AI176569NIH HHS U19AI110818
6 · The paper itself

Abstract

backgroundEcuador is a country working towards elimination of malaria since 2012. The number of malaria cases decreased by more than 99% since 2001. Nevertheless, in recent years the progress has stagnated, and the number of cases has remained constant or increased in some areas. One of the main difficulties for the elimination of malaria in Ecuador is migration from neighboring countries. More than 75% of Plasmodium falciparum cases are concentrated in the north coast of the country near the border with Colombia.

methodsWith the goal of contributing to epidemiological surveillance in Ecuador by characterizing the P. falciparum parasites circulating in the country, the present study focused on parasites collected in northwest Ecuador to identify the possible origin of P. falciparum currently circulating. We collected 72 clinical samples between 2019 and 2021 in three localities of northwest Ecuador as well as samples originating from the bordering Nariño department in Colombia that were diagnosed in Ecuador. We performed an analysis of seven microsatellite markers and whole genome sequencing (WGS) and compared them to previously studied parasites from the region to measure their relatedness as identity by descent (IBD).

resultsOur results show shared, highly clonal parasites between Ecuador and Colombia. All infections were monoclonal. Most importantly, a low frequency clone previously found circulating in the Pacific Coast of Colombia but not in Ecuador caused new outbreaks through clonal expansions. This clone had high genetic differentiation with parasites previously circulating in the Pacific Coast of South America.

conclusionThis study confirms the persistence of long-term clones in the Pacific Coast of South America and demonstrates the potential importance of low prevalence clones to become epidemic and hamper elimination efforts in low transmission areas.

Indexed as

Malaria, FalciparumPlasmodium falciparumColombiaDisease EradicationDisease OutbreaksEcuadorEpidemiological MonitoringGenome, ProtozoanHumansMicrosatellite RepeatsPrevalenceWhole Genome SequencingEcuadorGenetic diversityMalariaOutbreakPlasmodium falciparum

Identifiers

PMID41620656
PMCPMC12947485

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.