Evidence map›Paper›PMID 41620577›Full record

ArticleMolecular psychiatry2026

"SHANK3 deficiency alters early progenitor dynamics and reveals shared pathways with neurodegeneration".

Elisa Varella-Branco, Elizabeth Shephard, Victor H C Toledo, Igor C Ramos, Ellen C M Lacerda, Laura L M Carvalho, Marcella A Fiuza, Mayara Paschalidis, Claudia I S Costa, Ana C S Girardi and 8 more

Abstract read
In one paragraph

Article in Molecular psychiatry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

Elisa Varella-BrancoCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0001-7708-9486
Elizabeth ShephardInstituto de Psicologia, Universidade de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-5952-3565
Victor H C ToledoCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Igor C RamosCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Ellen C M LacerdaCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Laura L M CarvalhoCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Marcella A FiuzaCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Mayara PaschalidisCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Claudia I S CostaCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Ana C S GirardiCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0001-6531-501X
Ana C V KrepischiCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-2931-8605
Erasmo B CasellaUnidade de Neuropediatria do Instituto da Criança, Hospital das Clínicas da Faculdade de Medicina, Universidade de São Paulo, São Paulo, Brazil.
Guilherme PolanczykDepartamento de Psiquiatria, University of São Paulo Medical School, São Paulo, Brazil.ORCID http://orcid.org/0000-0003-2311-3289
Karina Griesi-OliveiraInstituto de Ensino e Pesquisa Albert Einstein, Albert Einstein Hospital, São Paulo, Brazil.ORCID http://orcid.org/0000-0002-0975-666X
Fabio PapesDepartment of Genetics, Evolution, Microbiology and Immunology, Institute of Biology, University of Campinas, Campinas, Brazil.ORCID http://orcid.org/0000-0001-5034-4088
Lucas AlviziDepartment of Cell and Developmental Biology, University College London, London, UK.
Gerson S KobayashiCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil.
Maria Rita Dos Santos E Passos BuenoCentro de Pesquisa sobre o Genoma Humano e Células Tronco (CEGH-CEL), Instituto de Biociências, Universidade de São Paulo, São Paulo, Brazil. passos@ib.usp.br.ORCID http://orcid.org/0000-0002-9248-3008

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior (Brazilian Federal Agency for the Support and Evaluation of Graduate Education) 88887.475139/2020-00
6 · The paper itself

Abstract

Phelan-McDermid Syndrome (PMS), primarily linked to SHANK3 haploinsufficiency, presents with complex neurodevelopmental features, including developmental regression, whose underlying mechanisms are poorly understood. This study investigated the impact of SHANK3 disruption across multiple levels, from gene expression in patient-derived iPSC neurons to in vivo brain network activity. RNA-sequencing of iPSC-derived neurons from PMS patients with SHANK3 disruption only (n = 9) and controls (n = 7) revealed dysregulation in differential gene expression and co-expression modules linked to cell cycle, RNA metabolism, and metabolic pathways in SHANK3-mutated neurons. All modules were correlated with PMS regression and enriched for genes implicated in neurodevelopmental or neurodegenerative disorders, such as autism, ADHD, and Alzheimer's disease. At the cellular level, SHANK3-mutated cultures exhibited increased proliferation of neural progenitors and intermediate progenitor markers. Differentiated neurons showed reduced morphological complexity, specific changes in postsynaptic marker density and puncta size, and electrophysiological characteristics suggestive of neuronal hyperexcitability. Electroencephalography (EEG) in a PMS patient cohort (n = 20) compared to controls (n = 30) demonstrated hyperconnectivity and excessive high-frequency oscillations, suggesting altered neural network dynamics. In summary, the use of different analytical approaches suggested that SHANK3 haploinsufficiency disrupts neurodevelopmental trajectories and revealed that regression in PMS may share common genes and pathways with neurodegeneration. We also characterized molecular and neurophysiological markers that can be useful in therapeutic protocols for PMS.

Indexed as

Chromosome DisordersNerve Tissue ProteinsBrainCell DifferentiationChromosome DeletionChromosomes, Human, Pair 22ElectroencephalographyFemaleHaploinsufficiencyHumansInduced Pluripotent Stem CellsMaleMutationNeural Stem CellsNeurodegenerative DiseasesNeurodevelopmentNerve Tissue ProteinsSHANK3 protein, human

Identifiers

PMID41620577
PMCPMC13190290

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.