Evidence map›Paper›PMID 41618556›Full record

ArticlePlant communications2026

The LPA1-ITA1-BRXL4 module regulates shoot gravitropism and tiller angle in rice.

Cheng Fang, Danlin Zhao, Weimin Cheng, Hongrui Jiang, Dongyang Zhang, Liangzhi Tao, Yue Zhan, Hui Wang, Yu Fang, Guangle Shen and 7 more

Abstract read
In one paragraph

Article in Plant communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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0 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors.

Cheng FangKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Danlin ZhaoState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China.
Weimin ChengKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Hongrui JiangKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Dongyang ZhangKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Liangzhi TaoKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Yue ZhanKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Hui WangWin-all Hi-tech Seed Co., Ltd., Key Laboratory for New Variety Creative of Hybrid Rice, Ministry of Agriculture and Rural Affairs, Hefei, China.
Yu FangWin-all Hi-tech Seed Co., Ltd., Key Laboratory for New Variety Creative of Hybrid Rice, Ministry of Agriculture and Rural Affairs, Hefei, China.
Guangle ShenWin-all Hi-tech Seed Co., Ltd., Key Laboratory for New Variety Creative of Hybrid Rice, Ministry of Agriculture and Rural Affairs, Hefei, China.
Wei YangWin-all Hi-tech Seed Co., Ltd., Key Laboratory for New Variety Creative of Hybrid Rice, Ministry of Agriculture and Rural Affairs, Hefei, China.
Conghe ZhangWin-all Hi-tech Seed Co., Ltd., Key Laboratory for New Variety Creative of Hybrid Rice, Ministry of Agriculture and Rural Affairs, Hefei, China.
Binmei LiuKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Yuejin WuKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China.
Xiangdong FuState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China; New Cornerstone Science Laboratory, College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China. Electronic address: xdfu@genetics.ac.cn.
Kun WuState Key Laboratory of Seed Innovation, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, Beijing 100101, China. Electronic address: kunwu@genetics.ac.cn.
Yafeng YeKey Laboratory of High Magnetic Field and Ion Beam Physical Biology, Hefei Institutes of Physical Science, Chinese Academy of Sciences, Hefei 230031, China. Electronic address: yyfeng86@163.com.

Funding

Non-US Government Research Support type
6 · The paper itself

Abstract

Tiller angle is a critical agronomic trait that influences rice plant architecture and yield potential. However, the molecular mechanisms underlying its regulation remain incompletely understood. Here, we report that ITA1 (LOC_Os01g51260), which encodes an MYB family transcription factor, positively regulates shoot gravitropism and restricts tiller angle in rice. The ita1 mutant, which is characterized by a 740-bp deletion in the ITA1 promoter, displays an increased tiller angle due to elevated ITA1 expression. Functional assays demonstrate that ITA1 directly activates BRXL4, a gene that modulates auxin transport by influencing the subcellular localization of LAZY1, a key regulator of shoot gravitropism. Yeast one-hybrid assays, chromatin immunoprecipitation-qPCR, electrophoretic mobility shift assays, and luciferase assays reveal that the transcriptional repressor LPA1, a member of the IDD family, directly binds to the 740-bp region deleted in the ita1 mutant and represses ITA1 expression. Genetic evidence shows that the lpa1 mutant phenocopies ita1 and that the increased tiller angle phenotype is partially suppressed in the ita1-c1 lpa1 double mutant. Together, our findings define a previously unknown LPA1-ITA1-BRXL4 regulatory cascade that controls shoot gravitropism and tiller angle by modulating auxin distribution. This study provides new insights into plant architectural regulation and identifies potential genetic targets for optimizing rice planting density and yield.

Indexed as

GravitropismOryzaPlant ProteinsPlant ShootsTranscription FactorsGene Expression Regulation, PlantIndoleacetic AcidsIndoleacetic AcidsPlant ProteinsTranscription FactorsauxinITA1riceshoot gravitropismtiller angle

Identifiers

PMID41618556
PMCPMC13174221

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LicenceCC BY-NC-ND
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.