Evidence map›Paper›PMID 41618052›Full record

ArticleDiscover oncology2026

Construction of a prognostic model and multidimensional analysis of hepatocellular carcinoma based on palmitoylation-related genes.

Hui Zhang, Huan Su, Kaimei Xia, Haiyan Wang, Yi Wu, Yan Xiong, Ting Deng, Ping Du

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Article in Discover oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

8 authors.

Hui ZhangBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Huan SuBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Kaimei XiaBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Haiyan WangBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Yi WuBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Yan XiongBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Ting DengBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China.
Ping DuBijie Traditional Chinese Medicine Hospital, Bijie, 551700, China. DP15285713342@126.com.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThis study aims to construct a prognostic model for hepatocellular carcinoma (HCC) based on palmitoylation-related genes and explore its molecular mechanisms through multi-dimensional analyses.

methodsThe research integrated single-cell transcriptome data (GSE189903) with bulk transcriptome data (TCGA-LIHC, GEO datasets), focusing on palmitoylation-related genes in HCC epithelial cells. The scAB deconvolution algorithm was used to analyze the association between epithelial cell subsets and patient survival, and hdWGCNA was combined to construct a gene co-expression network. Through differential expression analysis, univariate Cox regression, and LASSO penalized regression, 7 key genes (SERPINE1, FMO3, ALDH2, CPS1, SLCO1B1, ACAT1, ACADS) were identified to build a prognostic risk model.

resultsValidation results showed that the model could effectively distinguish the survival prognosis of high-risk and low-risk patients (AUC values for 1/3/5 years in the TCGA cohort were 0.676, 0.656, and 0.642, respectively; those in the GSE14520 validation set were 0.702, 0.658, and 0.654, respectively), and the risk score was an independent prognostic factor. Further analyses revealed that the risk score was associated with tumor staging, immune cell infiltration (e.g., T cells, monocytes), response to immunotherapy, and drug sensitivity. Functional enrichment analysis indicated that the high-risk group was enriched in cell cycle regulation and oncogenic signaling pathways, while the low-risk group was related to metabolic pathways.

conclusionThis study is the first to analyze the regulatory network of palmitoylation in HCC epithelial cells by combining single-cell and bulk transcriptomes, providing new molecular targets and methodological references for HCC prognosis evaluation and precision therapy.

Indexed as

BioinformaticsHepatocellular carcinomaImmune infiltrationPalmitoylationPrognostic modelSingle-cell transcriptome

Identifiers

PMID41618052
PMCPMC12873020

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.