Evidence map›Paper›PMID 41613871›Full record

ReviewBiophysical reviews2025

Evolution of ribosome X-ray crystallography: from first crystals to atomic resolution.

L I Nurullina, A D Biktimirov, M M Yusupov, K S Usachev

Abstract readReview
In one paragraph

Review in Biophysical reviews, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

L I NurullinaNational Research Center, Kurchatov Institute, Moscow, Russia.
A D BiktimirovNational Research Center, Kurchatov Institute, Moscow, Russia.
M M YusupovNational Research Center, Kurchatov Institute, Moscow, Russia.
K S UsachevNational Research Center, Kurchatov Institute, Moscow, Russia.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

X-ray crystallography has been pivotal in elucidating the structural basis of ribosome function and in informing antibiotic design, from early challenges in purifying and crystallizing these mega-Dalton assemblies to recent advances integrating synchrotron radiation and X-ray free-electron lasers for high-resolution and time-resolved studies. Methodological innovations - including stress-induced lattice packing, extremophile ribosome sources, optimization of the purification procedure and vapor-diffusion screens - have yielded crystals diffracting up to 2.4 Å. Progress in phasing strategies, from multiple isomorphous replacement and multiwavelength anomalous dispersion/single-wavelength anomalous dispersion to cryogenic electron microscopy-guided molecular replacement and serial femtosecond crystallography, has overcome the phase problem for large complexes. Landmark structures of prokaryotic and eukaryotic ribosomes have elucidated the architectural principles underlying peptide bond formation and messenger RNA decoding, leading to inhibitor discovery. Despite the rise of cryogenic electron microscopy, crystallography remains indispensable for mechanistic insights and rational drug design targeting ribosomal sites.

Indexed as

AntibioticsFunctional sitesRibosomeStructureX-ray crystallography

Identifiers

PMID41613871
PMCPMC12847518

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.