ArticleFrontiers in plant science2025
Comparative analyses of the organelle genomes in
Article in Frontiers in plant science, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.
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Abstract
Introduction: Methods: To fill this gap, we applied a hybrid sequencing approach combining Illumina short reads and Nanopore long reads, and assembled the complete mitochondrial and chloroplast genomes of Results: The circular mitochondrial genome spans 461,675 bp, and encodes 40 protein-coding genes (PCGs), 26 tRNA genes, and 3 rRNA genes. The complete chloroplast genome is 160,000 bp in length, comprising 84 PCGs, 37 tRNA genes, and 8 rRNA genes. Both genomes contain numerous repetitive sequences. Codon usage analysis revealed a preference for leucine and codons ending with A or U, and several non-canonical start and stop codons were corrected via RNA editing. We identified 34 homologous sequence fragments, indicating frequent intracellular gene transfer events between the mitochondrion and chloroplast. Phylogenetic analysis confirmed that Discussion: These findings expand the organelle genome resources for Caricaceae and provide valuable molecular evidence for phylogenetic and evolutionary studies within the family.
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