Evidence map›Paper›PMID 41604108›Full record

ArticleEuropean journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology2026

Genomic insights into phage SGP007 reveal a potent therapeutic candidate for targeted control of salmonellosis in poultry.

Sidra Tul Muntaha, Gul Nabi Khan, Ibrar Khan, Muhammad Hassan, Iqbal Ahmed Alvi, Tawaf Ali Shah, Gehan M Elossaily, Turki M Dawoud

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Article in European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Sidra Tul MuntahaDepartment of Zoology, Islamia College University, Peshawar, 25120, Pakistan.
Gul Nabi KhanDepartment of Zoology, Islamia College University, Peshawar, 25120, Pakistan. gulnabi@icp.edu.pk.
Ibrar KhanDepartment of Microbiology, Abbottabad University of Science and Technology, Havelian, 22010, Pakistan. abrar@aust.edu.pk.
Muhammad HassanDepartment of Microbiology, Hazara University, Mansehra, 21300, Pakistan.
Iqbal Ahmed AlviDepartment of Microbiology, Hazara University, Mansehra, 21300, Pakistan.
Tawaf Ali ShahCollege of Agriculture Engineering and Food Science, Shandong University of Technology, Zibo, 255000, China.
Gehan M ElossailyDepartment of Basic Medical Sciences, College of Medicine, AlMaarefa University, Diriyah, Riyadh, 13713, Saudi Arabia.
Turki M DawoudDepartment of Botany and Microbiology, College of Science, King Saud University, P. O. BOX 2455, Riyadh, 11451, Saudi Arabia. tdwoud@ksu.edu.sa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThis study characterized Salmonella bacteriophage SGP007 to assess its potential as a safe and effective biocontrol or therapeutic agent against pathogenic Salmonella.

resultsTransmission electron microscopy revealed Podoviridae family traits, including an icosahedral head and short, non-contractile tail. Whole-genome sequencing identified a 43,156-base-pair, double-stranded DNA genome with 50.2% G + C content, consistent with Jerseyviruses targeting Salmonella enterica subsp. enterica serovar Gallinarum. Bioinformatic analysis annotated 58 open reading frames, encompassing DNA replication (helicase, methyltransferase), structural assembly (portal, capsid, tail), and host lysis (holin, spanin, endolysin) modules. A single tRNA-Ser-UGA gene was detected, with codon bias compatible with Salmonella's translational system. Critically, the genome lacked lysogenic, virulence, antimicrobial resistance, or toxin-related sequences, confirming its safety. Computational tools (PHASTER, PHACTS, PhageAI) verified an obligately lytic lifecycle. Phylogenetic analysis of the large terminase subunit and genome-wide comparisons (VICTOR, VIPTree) positioned SGP007 within a distinct Jerseyvirus subclade, closely related to Salmonella-specific phages SETP7 and BPS11Q3. VIRFAM classification assigned it to Neck Type 1 - Cluster 3, reflecting its streamlined morphology. The infection cycle follows a typical lytic pathway: receptor binding, DNA ejection, gene expression, replication, virion assembly, and lytic release.

conclusionThis genomic evidence showed that SGP007 was virulent lytic phage, optimized for rapid replication and host lysis without genomic integration.

Indexed as

Genome, ViralPhage TherapyPoultry DiseasesSalmonella Infections, AnimalSalmonella PhagesAnimalsBase CompositionDNA, ViralGenomicsOpen Reading FramesPhylogenyPodoviridaePoultrySalmonellaSalmonella entericaWhole Genome SequencingDNA, ViralElectron microscopyGenome annotationJerseyvirusLytic bacteriophagePhylogenetic analysisSalmonella phage SGP007Therapeutic phage candidate

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.