Evidence map›Paper›PMID 41601477›Full record

ArticleFrontiers in bioinformatics2025

REST missense mutations reveal disrupted Re1 motif binding and co-repressor interactions in uterine fibroids.

Srineevas Sriram, Chandresh Palanichamy, P T Subash, Manshi Kumari Gupta, C Sudandiradoss

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Article in Frontiers in bioinformatics, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 authors.

Srineevas SriramDepartment of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
Chandresh PalanichamyDepartment of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
P T SubashDepartment of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
Manshi Kumari GuptaDepartment of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.
C SudandiradossDepartment of Biotechnology, School of Biosciences and Technology, Vellore Institute of Technology, Vellore, Tamil Nadu, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Introduction: The Re1-Silencing Transcription Factor (REST) is a master regulator of gene silencing, orchestrating transcriptional repression by tethering chromatin-modifying co-repressors to the Re1 motif of target genes. While REST is recognized as a sentinel of cellular identity, its role in uterine fibroids (UF) remains unclear. This study aims to investigate how structural perturbations in REST may compromise its regulatory function and contribute to altered transcriptional control in fibroid biology. Methods: A deep structural interrogation of REST was performed through expansive Results: Five structurally disruptive REST variants (Y31C, Y31D, L76Q, Y283C, L427Q) were identified at evolutionarily conserved residues. Structural modelling and docking analyses revealed weakened affinity for co-repressors, with the Y283C variant showing a marked reduction in SIN3A interaction (Z-score: 2.4 to -1.2) and impaired DNA binding (Z-score: 2.0 to -1.3). Molecular dynamics simulations demonstrated that Y283C increased rigidity (RMSF: 0.33 to 0.27 nm), reduced compactness (Rg: 3.48-3.51 nm), and lowered potential energy. Upon Re1 binding, destabilization intensified, with increased RMSD (0.95-1.07 nm) and pronounced shifts in energy. Discussion: This integrative analysis highlights REST as a candidate regulatory component in uterine fibroid biology. Structural disruption of REST, particularly through the Y283C mutation, may destabilize molecular interactions and compromise DNA-binding precision, potentially unleashing transcriptional noise that fuels fibroid growth. These findings suggest that perturbation of REST-mediated transcriptional repression may be associated with altered regulatory control in this disease and could inform future strategies to investigate dysregulation in uterine fibroids.

Indexed as

MD simulationsprotein-DNA dockingprotein-protein dockingre1 motifREST (re1-silencing transcription factor)uterine fibroids

Identifiers

PMID41601477
PMCPMC12832642

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