Evidence map›Paper›PMID 41593779›Full record

ArticleGenome biology2026

SCITO-seq2: ultra-high-throughput single-cell transcriptome and epitope sequencing.

Su-Hyeon Lee, Bo-Yeong Jin, Cho-Rong Lee, Doo Ri Kim, Areum Shin, Sung-Gyoo Park, Yae-Jean Kim, Seong Heon Kim, Murim Choi, Byungjin Hwang

Abstract read
In one paragraph

Article in Genome biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Su-Hyeon Lee *Department of Biomedical Sciences, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea.
Bo-Yeong Jin *Department of Biomedical Sciences, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea.
Cho-Rong LeeCollege of Pharmacy and Research Institute of Pharmaceutical Science, Seoul National University, Seoul, Republic of Korea.
Doo Ri KimDivision of Infectious Diseases and Immunodeficiency, Department of Pediatrics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Areum ShinDivision of Infectious Diseases and Immunodeficiency, Department of Pediatrics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Sung-Gyoo ParkCollege of Pharmacy and Research Institute of Pharmaceutical Science, Seoul National University, Seoul, Republic of Korea.
Yae-Jean KimDivision of Infectious Diseases and Immunodeficiency, Department of Pediatrics, Samsung Medical Center, Sungkyunkwan University School of Medicine, Seoul, Republic of Korea.
Seong Heon KimDepartment of Pediatrics, Seoul National University Children's Hospital & College of Medicine, Seoul, Republic of Korea.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, 03080, Republic of Korea. murimchoi@snu.ac.kr.
Byungjin HwangDepartment of Biomedical Sciences, Yonsei University College of Medicine, Seoul, 03722, Republic of Korea. bjhwang113@yuhs.ac.

Funding

National Research Foundation of Korea RS-2023-00276271Samsung Science and Technology Foundation SSTF-BA2301-01Yonsei University College of Medicine 6-2022-0181
6 · The paper itself

Abstract

We introduce SCITO-seq2, an enhanced successor to SCITO-seq that integrates probe-based RNA detection with the established ultra-high-throughput protein profiling. SCITO-seq2 achieves robust quantification of transcripts and surface proteins across more than 100,000 cells, with a shared pool barcoding strategy ensuring precise matching of molecular profiles within multiplexed droplets. SCITO-seq2 is compatible with cell hashing technology, allowing efficient sample multiplexing. We demonstrate its utility in autoimmune diseases, including childhood systemic lupus erythematosus and CTLA4 haploinsufficiency with autoimmune infiltration, enabling the detection of minor immune clusters and disease-specific protein signatures. This platform establishes a scalable, streamlined, and cost-effective next-generation single-cell multi-omics workflow.

Indexed as

EpitopesHigh-Throughput Nucleotide SequencingSingle-Cell AnalysisTranscriptomeCTLA-4 AntigenGene Expression ProfilingHaploinsufficiencyHumansLupus Erythematosus, SystemicSingle-Cell Gene Expression AnalysisCTLA-4 AntigenEpitopesChildhood systemic lupus erythematosusCTLA4 haploinsufficiency with autoimmune infiltrationSingle-cell multi-omicsUltra-high-throughput sequencing

Identifiers

PMID41593779
PMCPMC12918474

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.