Evidence map›Paper›PMID 41593079›Full record

ArticleNature communications2026

A spatially resolved atlas of gastric cancer characterises a lymphocyte-aggregated region.

Sen Gao, Shishang Qin, Dongfang Wang, Anqiang Wang, Linnan Zhu, Yang Li, Qiang Shi, Hongtao Fan, Yufei Bo, Yunshan Zhong and 12 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Sen Gao *Biomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.ORCID 0000-0002-9921-4230
Shishang Qin *Biomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.ORCID 0000-0003-0324-5073
Dongfang Wang *Biomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.ORCID 0000-0003-1368-028X
Anqiang Wang *Department of Gastrointestinal Surgery, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China.ORCID 0000-0002-9823-1880
Linnan Zhu *Biomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Yang LiDepartment of Gastrointestinal Surgery, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China.ORCID 0009-0009-4213-8327
Qiang ShiBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.ORCID 0000-0003-1851-773X
Hongtao FanBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Yufei BoBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Yunshan ZhongChangping Laboratory, Beijing, China.ORCID 0000-0002-9254-515X
Yuxuan SunBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Kun DongDepartment of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China.
Liqin FuBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Ranran GaoAnalytical Biosciences Limited, Beijing, China.
Yan WuDepartment of Pathology, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China.
Ye LiangBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Luyujie HuangBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China.
Xueda HuAnalytical Biosciences Limited, Beijing, China.
Xianwen RenChangping Laboratory, Beijing, China.ORCID 0000-0002-8558-5401
Zhaode BuDepartment of Gastrointestinal Surgery, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China. buzhaode@cjcrcn.org.ORCID 0000-0001-8728-9676
Jiafu JiDepartment of Gastrointestinal Surgery, Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, China. jijiafu@hsc.pku.edu.cn.ORCID 0000-0001-6878-5543
Zemin ZhangBiomedical Pioneering Innovative Center and School of Life Sciences, Peking University, Beijing, China. zemin@pku.edu.cn.ORCID 0000-0003-3789-6536

Funding

Beijing Municipal Science and Technology Commission Z221100007022002National Natural Science Foundation of China (National Science Foundation of China) 62203019National Natural Science Foundation of China (National Science Foundation of China) 91959000National Natural Science Foundation of China (National Science Foundation of China) 92159305Recruited Scholars of Chongqing Medical University
6 · The paper itself

Abstract

The tumour microenvironment is a focal point in cancer immunotherapy: its cellular composition and spatial organisation can affect the clinical outcomes of cancer patients. By integrating single-cell and spatial transcriptomics, we identify four spatial regions and survey how cellular spatial distribution varies across them in gastric cancer. One region, the Lymphocyte Aggregated Region, consists of lymphocyte aggregates and tertiary lymphoid structures. Within it, we observe associations between naive T cell abundance and T cell activation-associated pathways, and correlations exist between distribution patterns of different lymphocytes and two transcriptomically distinct groups - more activated lymphocytes reside in the adjacent cancerous regions of Group A, while more resting lymphocytes settle in those of Group B. Within Group A, PD1

Indexed as

Lymphocytes, Tumor-InfiltratingStomach NeoplasmsTumor MicroenvironmentCD8-Positive T-LymphocytesDendritic CellsHumansLymphocyte ActivationProgrammed Cell Death 1 ReceptorSingle-Cell AnalysisSpatial TranscriptomicsTertiary Lymphoid StructuresProgrammed Cell Death 1 Receptor

Identifiers

PMID41593079
PMCPMC12948980

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.