Evidence map›Paper›PMID 41592598›Full record

ArticleClinical and molecular hepatology2026

DNMT1 facilitates the progression of metabolic dysfunction-associated steatotic liver disease by impeding transcription mediated by HNF4α and PPARα.

Hyun Ahm Sohn, Hanyong Go, Tae Hyeon An, Jun Min Lee, Hee-Jin Kim, Keeok Haam, Amal Magdy, Hyo-Jung Jung, Yang-Ji Shin, Hyun Jung Lim and 16 more

Abstract read
In one paragraph

Article in Clinical and molecular hepatology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Review
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  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

26 authors.

Hyun Ahm Sohn *Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Hanyong Go *Aging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Tae Hyeon An *Metabolic Regulation Research Center, KRIBB, Daejeon, Korea.
Jun Min LeeAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Hee-Jin KimAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Keeok HaamKorea Bioinformation Center (KOBIC), KRIBB, Daejeon, Korea.
Amal MagdyAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Hyo-Jung JungAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Yang-Ji ShinSmart Farm Research Center, Korea Institute of Science and Technology (KIST), Gangneung Institute of Natural Products, Gangneung, Korea.
Hyun Jung LimAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Yujin JeongAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Yejin BaeIntegrated Metabolomics Research Group, Metropolitan Seoul Center, Korea Basic Science Institute, Seoul, Korea.
Youngae JungIntegrated Metabolomics Research Group, Metropolitan Seoul Center, Korea Basic Science Institute, Seoul, Korea.
Seong-Hwan ParkGenomic Medicine Research Center, KRIBB, Daejeon, Korea.
Kyung Chan ParkDepartment of Functional Genomics, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon, Korea.
Myeong Jun SongDivision of Hepatology, Department of Internal Medicine, Daejeon St. Mary's Hospital, College of Medicine, The Catholic University of Korea, Seoul, Korea.
Eun-Wie ChoRare Disease Research Center, KRIBB, Daejeon, Korea.
Eun-Soo KwonAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea.
Jeong Hwan ParkDepartment of Pathology, Seoul National University College of Medicine, Seoul Metropolitan Government Boramae Medical Center, Seoul, Korea.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul, Korea.
Geum-Sook HwangIntegrated Metabolomics Research Group, Metropolitan Seoul Center, Korea Basic Science Institute, Seoul, Korea.
Dong Hyeon LeeDepartment of Internal Medicine, Division of Gastroenterology and Hepatology, Seoul National University College of Medicine, Seoul Metropolitan Government Boramae Medical Center, Seoul, Korea.
Kyoung-Jin OhDepartment of Functional Genomics, KRIBB School of Bioscience, Korea University of Science and Technology (UST), Daejeon, Korea. kjoh80@kribb.re.kr.
Won KimDepartment of Internal Medicine, Division of Gastroenterology and Hepatology, Seoul National University College of Medicine, Seoul Metropolitan Government Boramae Medical Center, Seoul, Korea. drwon1@snu.ac.kr.
Mirang KimAging Convergence Research Center, Korea Research Institute of Bioscience and Biotechnology (KRIBB), Daejeon, Korea. mirang@kribb.re.kr.
Innovative Target Exploration of NAFLD (ITEN) Consortium

Funding

Aging Convergence Research Center CRC22014-400Korea Basic Science Institute A423200Korea Research Institute of Bioscience and BiotechnologyNational Research Council of Science and TechnologyNational Research Foundation of Korea 2020R1A2C2102308National Research Foundation of Korea RS-2021-NR056442National Research Foundation of Korea RS-2022-NR067269National Research Foundation of Korea RS-2023-00223831National Research Foundation of Korea RS-2023-NR076422National Research Foundation of Korea RS-2024- 00440883National Research Foundation of Korea RS-2024-00449704National Research Foundation of Korea RS-2025-00522077National Research Foundation of Korea RS-2025-02305013National Research Foundation of Korea RS-2025-25458964Research Initiative Program KGM5192531Research Initiative Program KGM5392414
6 · The paper itself

Abstract

BACKGROUND/

aimsMetabolic dysfunction-associated steatotic liver disease (MASLD) is the most prevalent chronic liver disease worldwide. Aberrant DNA methylation, which is primarily maintained by DNA methyltransferase 1 (DNMT1), has been linked to metabolic dysregulation; however, its contribution to MASLD pathogenesis remains poorly defined. This study aimed to elucidate the role of DNMT1-mediated methylation in transcriptional regulation during MASLD progression and to determine whether DNMT1 inhibition can reverse disease-associated epigenetic and transcriptional alterations.

methodsWe conducted integrated analyses of the liver transcriptome (n=131) and DNA methylome (n=106) of patients with biopsy-proven MASLD. We evaluated the effect of DNMT1 inhibition with 5-aza-4'-thio-2'-deoxycytidine (Aza-TdC) on a diet-induced MASLD mouse model. Multiomics approaches, including DNA methylome profiling, lipidomics, RNA sequencing, and chromatin immunoprecipitation sequencing, were applied to elucidate the role of DNMT1-mediated DNA methylation in regulating pathogenic gene expression.

resultsDNA methylome profiling revealed increased methylation variability associated with increased DNMT1 expression in MASLD patients. DNMT1 inhibition ameliorated dysregulated lipid metabolism by reducing hepatic triacylglycerol accumulation and inflammation. Aza-TdC treatment partially reversed MASLD-related hypermethylation of hepatocyte nuclear factor 4 alpha (HNF4α)- and peroxisome proliferator-activated receptor alpha (PPARα)-regulated genes, restoring their transcriptional activity. Notably, Aza-TdC reactivated the gluconeogenic enzyme-encoding gene phosphoenolpyruvate carboxykinase 1 (PCK1), which was hypermethylated and transcriptionally repressed in MASLD. Targeted DNA methylation of the PCK1 promoter using CRISPRoff confirmed the direct epigenetic regulation of PCK1 expression.

conclusionsTargeting DNMT1 may mitigate lipid dysregulation and inflammation by reversing hypermethylation and restoring HNF4α- and PPARα-dependent gene transcription, highlighting DNMT1 as a potential therapeutic target for MASLD.

Indexed as

DNA (Cytosine-5-)-Methyltransferase 1Fatty LiverHepatocyte Nuclear Factor 4PPAR alphaAnimalsDisease Models, AnimalDisease ProgressionDNA MethylationEpigenesis, GeneticHumansLiverMaleMiceMice, Inbred C57BLNon-alcoholic Fatty Liver DiseasePromoter Regions, GeneticDNA (Cytosine-5-)-Methyltransferase 1DNMT1 protein, humanDnmt1 protein, mouseHepatocyte Nuclear Factor 4PPAR alphaDNA methylationDNA methyltransferase 1Hepatocyte nuclear factor 4 alphaNon-alcoholic fatty liver diseasePeroxisome proliferator-activated receptor alpha

Identifiers

PMID41592598
PMCPMC13430328

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.