Evidence map›Paper›PMID 41591659›Full record

ArticleWorld journal of microbiology & biotechnology2026

Biohealing through biocalcification by urolytic bacteria Bacillus subtilis ATCC 6633 on marble surfaces.

Turkan Dal Bicer, Seval Cing Yildirim, Fadime Nulufer Kivilcim, Ahmet Gultek

Abstract read
In one paragraph

Article in World journal of microbiology & biotechnology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Turkan Dal BicerDepartment of Biology, Science and Art Faculty, University of Inonu, Malatya, Turkey.
Seval Cing YildirimDepartment of Biology, Science and Art Faculty, University of Inonu, Malatya, Turkey. seval.cing@inonu.edu.tr.ORCID http://orcid.org/0000-0001-7163-9512
Fadime Nulufer KivilcimDepartment of Chemistry, Science and Art Faculty, University of Inonu, Malatya, Turkey.
Ahmet GultekDepartment of Chemistry, Science and Art Faculty, University of Inonu, Malatya, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigates the biocalcification potential of Bacillus subtilis ATCC 6633, a ureolytic bacterium, for the biohealing of marble surfaces through calcium carbonate (CaCO₃) precipitation. Comparative experiments were conducted using live and dead bacterial cells on CO₂-pre-treated and untreated marble samples, with calcium chloride and calcium acetate employed as calcium sources, to evaluate their effects on crystal polymorphism and surface modification. The results show that bacterial viability and calcium source jointly influence mineral phase formation, with live cells predominantly promoting the formation of stable calcite and aragonite, whereas dead cells and calcium acetate favor the formation of metastable vaterite. Microstructural and mineralogical analyses using scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDX), X-ray diffraction (XRD), and atomic force microscopy (AFM) confirmed substantial CaCO₃ deposition on marble surfaces. AFM measurements indicated a reduction in maximum pore depth, defined as the vertical height difference between pore bottoms and the surrounding marble surface, from 35.00 ± 7.07 μm in control samples to 22.50 ± 8.20 μm in biocalcified samples, reflecting partial filling of pores and cracks. In addition, micropores (0.02-0.03 mm) were fully filled, while macropores (3-5 mm) were partially occluded by crystalline deposits. CO₂ pre-treatment enhanced surface carbon availability and promoted more uniform CaCO₃ nucleation, as supported by SEM-EDX and XRD analyses. Overall, these findings indicate that microbially induced carbonate precipitation (MICP), combined with appropriate surface preconditioning and calcium source selection, represents a potential and sustainable strategy for marble conservation and related bio-construction applications.

Indexed as

Bacillus subtilisCalcium CarbonateCalcium ChlorideCarbon DioxideChemical PrecipitationMicroscopy, Atomic ForceMicroscopy, Electron, ScanningSpectrometry, X-Ray EmissionSurface PropertiesX-Ray DiffractionCalcium CarbonateCalcium ChlorideCarbon DioxideBacillus subtilis ATCC 6633CO₂ pre-treatmentCrystal polymorphismMarble biohealingMicrobially induced carbonate precipitation (MICP)

Identifiers

PMID41591659
PMCPMC12847223

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.