Evidence map›Paper›PMID 41588635›Full record

ReviewGenetics2026

The Caenorhabditis Genetics Center Curated Special Collections: a guide to protein degradation systems.

Jordan D Ward, David J Reiner, Aric L Daul, Ann E Rougvie

Abstract readReview
In one paragraph

Review in Genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Jordan D WardDepartment of Molecular, Cell, and Developmental Biology, University of California-Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0001-9870-8936
David J ReinerInstitute of Biosciences and Technology, Texas A&M Health Science Center, Houston, TX 77030, United States.ORCID 0000-0002-0344-7161
Aric L DaulCaenorhabditis Genetics Center, University of Minnesota, Minneapolis, MN 55455, United States.
Ann E RougvieCaenorhabditis Genetics Center, University of Minnesota, Minneapolis, MN 55455, United States.ORCID 0000-0002-8743-6143

Funding

Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
Understanding Ras effector switching and roles of Ras>RalGEF>Ral in developmentR35GM144237 · NIGMS · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI David Reiner · 2022 to 2026
$1.9M
Mechanisms of nematode moltingR01GM138701 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI WARD, JORDAN DAVID · 2020 to 2024
$1.6M
Mechanisms of nematode moltingR35GM158317 · NIGMS · UNIVERSITY OF CALIFORNIA SANTA CRUZ · PI Jordan David Ward · 2025 to 2026
$764k
Uncoupling Ral signal transduction from Exocyst functionsR03CA289854 · NCI · TEXAS A&M UNIVERSITY HEALTH SCIENCE CTR · PI REINER, DAVID · 2024 to 2025
$147k
NCI NIH HHS R03 CA289854NIGMS NIH HHS R01 GM138701NIGMS NIH HHS R35 GM144237NIGMS NIH HHS R35 GM158317NIH HHS P40 OD010440NIH HHS R35GM144237NIH HHS R35GM158317
6 · The paper itself

Abstract

The Caenorhabditis Genetics Center is launching a new website feature-"Curated Special Collections"-designed to help researchers navigate the ever-evolving lists of strains harboring specialized genetic tools. Each collection will be assembled by experts who provide an overview of the system and curate the strains and their associated information as the collection expands. A companion review article will provide an in-depth analysis of each tool collection, including comparisons of different methods and modifications, discussion of their advantages and limitations, and practical guidance for getting started. The first collection in this series, Protein Degradation Systems, focuses on 2 protein depletion methods: (i) the auxin-inducible and (ii) ZIF-1/ZF1 degradation systems. Both methods are increasingly popular in Caenorhabditis elegans research because they allow rapid and precise temporal and spatial control over protein depletion. The inaugural collection and this companion review, together with additional collections forthcoming, will help researchers identify the most suitable approaches and strains for their experiments. Importantly, these collections will also lower the barrier for investigators primarily working in other model organisms to gain entry to the worm as a system for testing their ideas.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsProteolysisAnimalsIndoleacetic AcidsCaenorhabditis elegans ProteinsIndoleacetic Acidsauxin inducible degradation (AID)caenorhabditis eleganscaenorhabditis genetics centerZIF-1/ZF1 degradation

Identifiers

PMID41588635
PMCPMC13007530

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.