Evidence map›Paper›PMID 41588461›Full record

ArticleMicrobiome2026

Plasmids as persistent genetic reservoirs of bacterial defense systems in wastewater treatment.

Haotian Zheng, Leighton Payne, Wanli He, Mario Rodríguez Mestre, Lili Yang, Arnaud Dechesne, Rafael Pinilla-Redondo, Joseph Nesme, Søren J Sørensen

Abstract read
In one paragraph

Article in Microbiome, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Haotian ZhengSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Leighton PayneSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Wanli HeSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Mario Rodríguez MestreSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Lili YangSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Arnaud DechesneDepartment of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark.
Rafael Pinilla-RedondoSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Joseph NesmeSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark.
Søren J SørensenSection of Microbiology, Department of Biology, University of Copenhagen, Copenhagen, Denmark. sjs@bio.ku.dk.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundBacterial antiphage defense systems play essential roles in microbial ecology, yet their dynamics within urban wastewater systems (UWS) remain poorly characterized.

resultsIn this study, we performed comprehensive metagenomic and plasmidome analyses on 78 wastewater samples collected during two seasons and four sampling points across UWS from three European countries. We observed a significant reduction in the abundance, diversity, and mobility potential of defense systems during biological treatment. However, these reductions were not directly correlated with changes in microbial abundance. Defense systems were significantly enriched on plasmids, particularly conjugative plasmids, where their gene density was approximately twice as high as on chromosomes and remained relatively stable across compartments. In contrast to chromosomal defense systems, plasmid-borne systems exhibited more frequent co-localization with a wide range of mobile genetic elements (MGEs)-associated genes, thereby facilitating multilayered dissemination networks. Furthermore, we detected a strong correlation between phage abundance and host defense system profiles, indicating ongoing phage-host co-evolutionary dynamics in these environments.

conclusionsIn summary, our results demonstrate that UWS reduce the abundance and diversity of bacterial defense system genes. However, plasmid-associated defense systems can persist through shared mobile genetic reservoirs. These findings underscore the critical role of plasmids in bacterial immunity and provide new insights into defense system dynamics within urban wastewater environments.

Indexed as

BacteriaBacteriophagesPlasmidsWastewaterWater PurificationInterspersed Repetitive SequencesMetagenomeMetagenomicsPhage TherapyWastewaterAntiphage defense systemsMetagenomePlasmidPlasmidomeWastewater

Identifiers

PMID41588461
PMCPMC12853721

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.