Evidence map›Paper›PMID 41585460›Full record

SynthesisF1000Research2025

Strengthening bioinformatics education: e-learning initiatives across ELIXIR Nodes and Communities.

Monique Zahn-Zabala, Minna Ahokas, Bérénice Batut, Sebastian Beier, Alexander Botzki, Alexia Cardona, Kristina Gruden, Eija Korpelainen, Maria Lehtivaara, Brane Leskosek and 11 more

Abstract readSystematic Review
In one paragraph

Synthesis in F1000Research, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors.

Monique Zahn-ZabalaSwiss Institute of Bioinformatics, Lausanne, Vaud, Switzerland.ORCID 0000-0001-7961-6091
Minna AhokasCSC IT Center for Science Ltd, Espoo, Uusimaa, Finland.ORCID 0000-0003-2313-0011
Bérénice BatutInstitut Francais de Bioinformatique, Villejuif, Île-de-France, France.ORCID 0000-0001-9852-1987
Sebastian BeierForschungszentrum Julich GmbH, Jülich, North Rhine-Westphalia, Germany.ORCID 0000-0002-2177-8781
Alexander BotzkiVlaams Instituut voor Biotechnologie, Ghent, Flanders, Belgium.ORCID 0000-0001-6691-4233
Alexia CardonaUniversity of Cambridge, Cambridge, England, UK.
Kristina GrudenNational Institute of Biology Department of Biotechnology and Systems Biology, Ljubljana, Ljubljana, Slovenia.
Eija KorpelainenCSC IT Center for Science Ltd, Espoo, Uusimaa, Finland.ORCID 0000-0002-4406-5602
Maria LehtivaaraCSC IT Center for Science Ltd, Espoo, Uusimaa, Finland.
Brane LeskosekUniversity of Ljubljana, Ljubljana, Ljubljana, Slovenia.
Bogdan MirăuțăRomanian Bioinformatics Cluster, Târgu Mureș, Romania.ORCID 0000-0002-9733-292X
Ajay MishraEMBL-EBI, Hinxton, England, UK.
Cyril PommierUniversite Paris-Saclay, Orsay, Île-de-France, France.ORCID 0000-0002-9040-8733
Krzysztof PoterlowiczUniversity of Bradford Faculty of Life Sciences, Bradford, England, UK.ORCID 0000-0001-6173-5674
Helena RascheErasmus MC Department of Pathology and Clinical Bioinformatics, Rotterdam, South Holland, The Netherlands.
Olivier SandInstitut Francais de Bioinformatique, Villejuif, Île-de-France, France.
Rob WaterhouseSwiss Institute of Bioinformatics, Lausanne, Vaud, Switzerland.ORCID 0000-0003-4199-9052
Samantha WittkeCSC IT Center for Science Ltd, Espoo, Uusimaa, Finland.ORCID 0000-0002-9625-7235
Cătălina Zenoaga-BarbăroșieRomanian Bioinformatics Cluster, Târgu Mureș, Romania.
Mihail AntonELIXIR Hub, Hinxton, England, UK.ORCID 0000-0002-7753-9042
Daniel WibbergForschungszentrum Julich GmbH, Jülich, North Rhine-Westphalia, Germany.ORCID 0000-0002-1331-4311

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The rapid evolution of bioinformatics and data-driven life sciences necessitates widespread, effective training solutions capable of transcending geographical and institutional boundaries. ELIXIR, as a pan-European bioinformatics research infrastructure, has strategically embraced e-learning methodologies to meet this challenge. This white paper systematically reviews the current landscape of e-learning initiatives across various ELIXIR Nodes and Communities, detailing both historical developments and contemporary practices. It identifies core attributes and desirable features of effective e-learning, presenting an analysis of diverse educational platforms and the deployment of Learning Management Systems (LMS) within ELIXIR's framework. Emphasis is placed on the interactive, open-access, and sustainable nature of these resources, exemplified by platforms such as the Training e-Support System (TeSS) and the ELIXIR-SI eLearning Platform (EeLP). The paper highlights critical advancements toward standardization and interoperability through initiatives such as the adoption of SCORM protocols, facilitating resource reuse across Nodes. Additionally, the integration of e-learning into broader educational strategies-such as hybrid learning environments and structured learning paths-is examined. Finally, future directions are discussed, including strategies for integrating e-learning with traditional training methods, enhancing trainer expertise, and further expanding the availability and FAIRification of bioinformatics training resources.

Indexed as

Computational BiologyComputer-Assisted InstructionEducation, DistanceHumansInternetLearningBioinformatics TrainingE-learningFAIR PrinciplesLearning Management Systems

Identifiers

PMID41585460
PMCPMC12831047

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.