Evidence map›Paper›PMID 41579174›Full record

ArticleNaunyn-Schmiedeberg's archives of pharmacology2026

Sex-dependent transcriptional responses and druggable targets in gentamicin-induced nephrotoxicity.

Pınar Portakal, Tuğba Gürkök-Tan

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In one paragraph

Article in Naunyn-Schmiedeberg's archives of pharmacology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

2 authors.

Pınar PortakalFood and Agriculture Vocational School, Cankiri Karatekin University, Çankırı, Turkey. pinarportakal@karatekin.edu.tr.ORCID http://orcid.org/0000-0002-5994-5872
Tuğba Gürkök-TanFood and Agriculture Vocational School, Cankiri Karatekin University, Çankırı, Turkey.ORCID http://orcid.org/0000-0003-0599-5628

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gentamicin is a potent aminoglycoside antibiotic, but its clinical use is limited by severe nephrotoxicity. Experimental and transcriptomic studies have indicated that the extent of renal injury and recovery following gentamicin exposure may differ between sexes, yet the underlying molecular mechanisms remain poorly understood. In this study, we investigated sex-specific transcriptional signatures, hub genes, transcription factors, and druggable molecular pathways involved in gentamicin-induced kidney injury and recovery. RNA-seq data from rat kidney tissues (male, female, and combined groups) were obtained from the NCBI-GEO database and analyzed at two time points corresponding to injury (day 15) and recovery (day 29). Differentially expressed genes were identified and subjected to functional enrichment (GO/KEGG), hub gene, and transcription factor detection analyses, followed by drug-gene interaction screening using DGIdb. Males exhibited a broader but more homogeneous transcriptional response, whereas females showed a narrower yet more pronounced activation pattern. A conserved mitotic core (BIRC5, BUB1B, CCNA2, CDC20) was shared across sexes and phases. Sex-dependent divergence emerged primarily during the recovery phase: PBK, CCNB1, and NUF2 were identified as female-specific proliferative hubs, whereas CDCA8 was uniquely enriched in males. Transcription factors CENPA, FOXM1, and MYBL2 formed a shared regulatory backbone, while DNMT1 appeared predominantly in male injury samples, suggesting a male-biased epigenetic component. DGIdb integration showed that among sex-specific hub genes, only CCNB1 had druggable interactions, whereas PBK, NUF2, and CDCA8 lacked pharmacological matches. In contrast, several core cell-cycle regulators (BIRC5, BUB1B, BUB1, CCNA2, CDK1) were highly druggable. These findings demonstrate that gentamicin nephrotoxicity is governed by a shared cell-cycle core but modulated by sex-specific repair programs, providing a molecular basis for the development of sex-tailored therapeutic strategies.

Indexed as

Anti-Bacterial AgentsGentamicinsKidneyAnimalsFemaleMaleRatsRats, Sprague-DawleySex CharacteristicsSex FactorsTranscription, GeneticTranscriptomeAnti-Bacterial AgentsGentamicinsDrug–gene interactionsGentamicin nephrotoxicityHub genesNetwork analysisSex differencesTranscriptomics

Identifiers

PMID41579174
PMCPMC13152955

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.