Evidence map›Paper›PMID 41572292›Full record

ReviewJournal of translational medicine2026

B-cell epitope prediction in the age of machine learning: advancements and challenges.

Fabrizio Gabellieri, Ankita Singh, Sukrit Gupta, Halima Bensmail, Filippo Castiglione, Raghvendra Mall

Abstract readReview
In one paragraph

Review in Journal of translational medicine, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Toward mechanistic virtual immune cells.Nature biotechnology · 2026
    Article
  2. Review
  3. Article
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Fabrizio GabellieriBiotechnology Research Center, Technology Innovation Institute, Masdar City, Abu Dhabi, 9639, UAE.
Ankita SinghBiotechnology Research Center, Technology Innovation Institute, Masdar City, Abu Dhabi, 9639, UAE.
Sukrit GuptaDepartment of Biomedical Engineering, School of AI and Data Engineering, Indian Institute of Technology Ropar, Roopnagar, Punjab, 140001, India.
Halima BensmailQatar Computing Research Institute, Hamad Bin Khalifa University, Doha, Qatar.
Filippo CastiglioneInstitute for Applied Computing, National Research Council of Italy, Viale del Policlinico, 19, 00185, Rome, Italy. filippo.castiglione@cnr.it.
Raghvendra MallBiotechnology Research Center, Technology Innovation Institute, Masdar City, Abu Dhabi, 9639, UAE. ramall@hbku.edu.qa.ORCID 0000-0003-1779-3150

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe identification of B-cell epitopes, the regions that bind to antibodies, is essential for creating effective prophylactic treatments against infectious diseases and cancer, particularly in the realm of reverse vaccinology. While experimental techniques like X-ray crystallography and peptide arrays help identify epitopes, they are expensive, time-consuming and differ in throughput and precision.

methodsThis review examines how predictive techniques and datasets have evolved for the problem, highlighting recent breakthroughs in data-driven algorithms used to predict B-cell epitopes. We specifically examine how methodologies have progressed from traditional machine learning to cutting-edge deep learning models. CONCLSION: The review summarizes significant research contributions in this domain including linear and conformational epitope prediction techniques, addresses methodological biases, dataset limitations, systematic evaluation challenges that plague the field, and explores future opportunities for innovation.

Indexed as

Epitopes, B-LymphocyteMachine LearningHumansImmunoinformaticsPrediction AlgorithmsPredictive Learning ModelsEpitopes, B-LymphocyteB-cell epitopesLinear conformational epitopesMachine learningProtein Language Models (PLMs)

Identifiers

PMID41572292
PMCPMC12908366

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.