Evidence map›Paper›PMID 41568004›Full record

ArticleFrontiers in cellular and infection microbiology2025

Redefinition of the toll-like receptor repertoire in

Akira Shiraishi, Shin Matsubara, Sakura Kikuchi, Kanako Hisata, Noriyuki Satoh, Larry J Dishaw, Honoo Satake

Abstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Akira ShiraishiBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
Shin MatsubaraBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.
Sakura KikuchiMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Japan.
Kanako HisataMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Japan.
Noriyuki SatohMarine Genomics Unit, Okinawa Institute of Science and Technology Graduate University, Onna, Japan.
Larry J DishawMorsani College of Medicine - Pediatrics, Children's Research Institute, University of South Florida, St. Petersburg, FL, United States.
Honoo SatakeBioorganic Research Institute, Suntory Foundation for Life Sciences, Kyoto, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Toll-like receptors (TLRs) are essential components of innate immunity, mediating the recognition of pathogen-associated molecular patterns (PAMPs) through extracellular leucine-rich repeat (LRR) domains and initiating signaling via intracellular Toll/interleukin-1 receptor (TIR) domains. In the ascidian Methods: we systematically reanalyzed the Results: Genomic mapping and sequence comparison demonstrated that TLR13 is identical to CiTLR1, while TLR3, -6, and -7 lack a complete TIR domain, indicating that these are not canonical TLRs. We further identified a novel TLR gene, CiTLRs1, located approximately 42 kb from CiTLR1 on chromosome 14, which encodes all essential structural features including LRR and TIR domains. AlphaFold3 structural predictions confirmed that CiTLR1, CiTLR2, and CiTLRs1 possess canonical solenoid LRR folds and typical TIR domain architectures. In addition, we found no convincing evidence that CiTLR3, CiTLR6, or CiTLR7 function as soluble TLRs. Transcriptomic analyses revealed distinct tissue-specific expression profiles of these genes, suggesting nonredundant immune functions. Conclusions: Our findings revise the repertoire of bona fide TLRs in

Indexed as

CionaCiona intestinalisToll-Like ReceptorsAnimalsGene Expression ProfilingGenomeGenomicsImmunity, InnateInnate Immunity RecognitionModels, MolecularPhylogenyToll-Like ReceptorsascidianCiona robustadomainleucine-rich repeatstructuretoll-like receptor

Identifiers

PMID41568004
PMCPMC12816324

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.