Evidence map›Paper›PMID 41566394›Full record

ArticleGenome biology2026

Comprehensive assessment of activity, specificity, and safety of hypercompact TnpB systems for gene editing.

Changchang Xin, Guanghai Xiang, Shiwei Cao, Yuhong Wang, Shaopeng Yuan, Xinyi Liu, Yongyuan Huo, Jing Sun, Xichen Wan, Duan Liu and 3 more

Abstract readEvaluation Study
In one paragraph

Article in Genome biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Changchang Xin *State Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, PKU-THU Center for Life Sciences, Peking University, Beijing, 100871, China.
Guanghai Xiang *Institute of Health and Medicine, Hefei Comprehensive National Science Center, Hefei, Anhui, 230601, China. xiangguanghai@ihm.ac.cn.
Shiwei Cao *State Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Yuhong Wang *State Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, PKU-THU Center for Life Sciences, Peking University, Beijing, 100871, China.
Shaopeng YuanState Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, PKU-THU Center for Life Sciences, Peking University, Beijing, 100871, China.
Xinyi LiuState Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, PKU-THU Center for Life Sciences, Peking University, Beijing, 100871, China.
Yongyuan HuoState Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Jing SunState Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Xichen WanDepartment of Ophthalmology, Eye & ENT Hospital, State Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Fudan University, Shanghai, 200031, China.
Duan LiuState Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China.
Jiaxu HongDepartment of Ophthalmology, Eye & ENT Hospital, State Key Laboratory of Brain Function and Disorders, MOE Frontiers Center for Brain Science, Fudan University, Shanghai, 200031, China.
Jiazhi HuState Key Laboratory of Gene Function and Modulation Research, School of Life Sciences, PKU-THU Center for Life Sciences, Peking University, Beijing, 100871, China. hujz@pku.edu.cn.
Haoyi WangState Key Laboratory of Organ Regeneration and Reconstruction, Institute of Zoology, Chinese Academy of Sciences, Beijing, 100101, China. wanghaoyi@ioz.ac.cn.

Funding

Biological Breeding-Major Projects of the ministry of Agriculture and Rural Affairs of China 2023ZD04074National Key Research and Development Program of China 2022YFC3400201NSFC grant 31771485NSFC grant 32101204Program of Beijing Institute for Stem Cell and Regenerative Medicine 2022FH122Science and Technology Major Project of Anhui Province 202423110050063the National Key R&D Program of China 2024YFA0917301the "Rising-Star Program" of "Shanghai 2024 Science and Technology Innovation Action Plan 24YF2703900
6 · The paper itself

Abstract

backgroundAs the ancestor of CRISPR-Cas12 nucleases, TnpB represents the most compact gene editing tool currently available. Recent studies have identified multiple TnpB systems with gene editing activity in mammalian cells, and the potential of TnpB in treating diseases has been demonstrated in animal models. However, the editing characteristics of various TnpB systems, comparable to CRISPR tools, require more extensive investigation.

resultsUsing a standardized evaluation framework, we conduct a thorough analysis of the editing properties of four TnpB variants alongside representative Cas12 and Cas9 tools applications. Overall, TnpBs exhibit intermediate editing activity and safety profiles among all tested systems, with ISYmu1 TnpB demonstrating a good performance in both editing activity and specificity. Considering its compact size, potent editing efficiency and high specificity, ISYmu1 TnpB represents a promising candidate for gene therapy.

conclusionsBy comprehensively analyzing genome editing outcomes, we characterize TnpB systems for genome editing and identify ISYmu1 TnpB as an optimal miniature RNA-guided genome editors with balanced performance, highlighting its potential for therapeutic applications.

Indexed as

CRISPR-Cas SystemsDNA Transposable ElementsGene EditingGene DeletionGenomic Structural VariationHEK293 CellsHumansMutagenesis, InsertionalDNA Transposable Elements

Identifiers

PMID41566394
PMCPMC12908284

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.