Evidence map›Paper›PMID 41563327›Full record

ArticleJournal of chemical theory and computation2026

Bayesian Optimization for High-Dimensional Coarse-Grained Model Parameterization: A Case Study on Pebax Polymer.

Carlos A Martins, Daniela A Damasceno, Keat Yung Hue, Caetano Rodrigues Miranda, Erich A Müller, Rodrigo A Vargas-Hernández

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Article in Journal of chemical theory and computation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Carlos A MartinsUniversity of São Paulo, Department of Materials Physics and Mechanics, Institute of Physics, Rua do Matão 1371, São Paulo 05508-090, Brazil.ORCID 0000-0001-6800-8533
Daniela A DamascenoUniversity of São Paulo, Department of Mechatronics and Mechanical Systems Engineering, Polytechnic School, Av. Professor Mello Moraes, 2231, São Paulo 05315-970, Brazil.ORCID 0000-0002-7660-982X
Keat Yung HueImperial College London, Department of Chemical Engineering, South Kensington Campus, London SW7 2AZ, U.K.
Caetano Rodrigues MirandaUniversity of São Paulo, Department of Materials Physics and Mechanics, Institute of Physics, Rua do Matão 1371, São Paulo 05508-090, Brazil.ORCID 0000-0002-8008-4907
Erich A MüllerImperial College London, Department of Chemical Engineering, South Kensington Campus, London SW7 2AZ, U.K.ORCID 0000-0002-1513-6686
Rodrigo A Vargas-HernándezDepartment of Chemistry and Chemical Biology, McMaster University, 1280 Main Street West, Hamilton, Ontario L8S 4M1, Canada.ORCID 0000-0002-5559-6521

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Coarse-grained (CG) force field models are extensively utilized in material simulations because of their scalability. Ordinarily, these models are parametrized using hybrid strategies that sequentially integrate top-down and bottom-up approaches. However, this combination restricts the capacity to jointly optimize all parameters. Although Bayesian optimization (BO) has been explored as an alternative search strategy to identify well-optimized CG parameters, its application has conventionally been limited to low-dimensional scenarios. This has contributed to the assumption that BO is unsuitable for more complex CG models, which often involve a large number of parameters. In this study, we challenge this assumption by successfully extending BO, using the tree-structured Parzen estimator (TPE) model, to optimize a high-dimensional CG model. Specifically, we show that a 41-parameter CG model of Pebax-1657, a copolymer composed of alternating polyamide and polyether segments, can be effectively parametrized using BO, resulting in a model that accurately reproduces the key physical properties of its parent atomistic representation. Our optimization framework simultaneously targets structural and thermodynamic properties, namely, density, radius of gyration, and glass transition temperature. Compared to traditional search algorithms, BO-TPE not only converges faster but also delivers consistent improvements over more standard parametrization approaches.

Identifiers

PMID41563327
PMCPMC12980707

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.