Evidence map›Paper›PMID 41559260›Full record

ArticleScientific reports2026

In silico design and immunoinformatics assessment of a multiepitope vaccine targeting borealpox virus.

Muhammad Naveed, Muhammad Asim, Tariq Aziz, Aroosa Athar, Muhammad Nouman Majeed, Nantenaina Tombozara, Mayasar I Al-Zaban, Ashwag Shami, Maher S Alwethaynani, Fakhria A Al-Joufi

Abstract read
In one paragraph

Article in Scientific reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Muhammad NaveedDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore, 54000, Pakistan. naveed.quadian@gmail.com.
Muhammad AsimDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore, 54000, Pakistan.
Tariq AzizLaboratory of Animal Health, Hygiene and Food Quality, University of Ioannina, 47132, Arta, Greece.
Aroosa AtharDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore, 54000, Pakistan.
Muhammad Nouman MajeedDepartment of Biotechnology, Faculty of Science and Technology, University of Central Punjab, Lahore, 54000, Pakistan.
Nantenaina TombozaraInstitut Malgache de Recherches Appliquées (IMRA), Fondation Albert Et Suzanne Rakoto-Ratsimamanga, PO Box 3833, Avarabohitra Itaosy, Antananarivo, Madagascar. nzara89@gmail.com.
Mayasar I Al-ZabanDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman University, P. O. Box 84428, Riyadh, 11671, Saudi Arabia.
Ashwag ShamiDepartment of Biology, College of Science, Princess Nourah bint Abdulrahman University, P. O. Box 84428, Riyadh, 11671, Saudi Arabia.
Maher S AlwethaynaniDepartment of Clinical Laboratory Sciences, College of Applied Medical Sciences, Shaqra University, Alquwayiyah, Riyadh, Saudi Arabia.
Fakhria A Al-JoufiDepartment of Pharmacology, College of Pharmacy, Jouf University, 72341, Aljouf, Saudi Arabia.

Funding

Princess Nourah Bint Abdulrahman University PNURSP2026R84
6 · The paper itself

Abstract

Borealpox virus is an emerging zoonotic pathogen with rising global prevalence and no approved vaccines or targeted treatments. This study aimed to design a multi-epitope subunit vaccine against Borealpox virus. The viral cell-surface binding protein was selected as the primary antigenic target due to its role in host-cell attachment. The finalized vaccine construct comprises 163 amino acids and includes β-defensin 3 as an adjuvant, a PADRE sequence, and suitable linkers to enhance immunogenicity. Structural prediction revealed a stable conformation, with 97.4% of residues located in the most favored regions of the Ramachandran plot. The vaccine exhibited a VaxiJen antigenicity score of 0.7089 and was predicted to be non-allergenic. Population coverage analysis indicated that the selected epitopes cover 96.22% of the global population. Five discontinuous B-cell epitopes were identified, with top scores reaching 0.823. Molecular docking demonstrated strong binding of the vaccine construct to both TLR2 and TLR4 receptors, with docking scores of - 1210.7 and - 321.55 for the TLR2-vaccine complex. Molecular dynamics simulations over 100 ns showed structural stability, with RMSD values ranging between 0.35 and 0.42 nm. Immune simulations predicted complete antigen clearance by day 7, accompanied by robust IgM and IgG1 responses and elevated IFN-γ and IL-2 levels. Codon optimization achieved an optimal GC content of 48.47% for Escherichia coli expression, and in silico cloning showed successful vector insertion. Further in vitro and in vivo studies are required to validate the vaccine protective efficacy and safety.

Indexed as

Epitopes, B-LymphocytePoxviridaeViral VaccinesAnimalsComputer SimulationImmunoinformaticsMolecular Docking SimulationMolecular Dynamics SimulationProtein Subunit VaccinesVaccines, SubunitEpitopes, B-LymphocyteProtein Subunit VaccinesVaccines, SubunitViral VaccinesBorealpox virusImmune simulationMolecular dockingMolecular dynamics simulationMulti-epitope vaccineT-cell epitopes

Identifiers

PMID41559260
PMCPMC12852795

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.