Evidence map›Paper›PMID 41557622›Full record

ArticlePloS one2026

Genomic analysis of Acinetobacter baumannii DUEMBL6 reveals diesel bioremediation potential and biosafety concerns.

Nizam Uddin, Monjima Islam Prova, Muttasim Billaha, Tasnimul Arabi Anik, Rahat Uzzaman, Nadia Haider, Faruk Islam, Humaira Akhter, Anowara Begum

Abstract read
In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Nizam UddinEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Monjima Islam ProvaEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Muttasim BillahaEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Tasnimul Arabi AnikEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.ORCID https://orcid.org/0009-0006-9929-7730
Rahat UzzamanEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Nadia HaiderEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Faruk IslamEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Humaira AkhterEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.
Anowara BegumEnvironmental Microbiology Laboratory, Department of Microbiology, University of Dhaka, Dhaka, Bangladesh.ORCID https://orcid.org/0000-0001-9915-3311

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

This study investigates the bioremediation potential of bacterial isolates from diesel-contaminated soils in Dhaka, Bangladesh. A total of 34 morphologically distinct bacterial strains were isolated from hydrocarbon-polluted sites, with Acinetobacter baumannii emerging as the dominant species (41.2%), followed by Pseudomonas otitidis and Klebsiella pneumoniae (11.8% each). Genetic screening revealed that 32.35% of isolates harbored the alkB gene (alkane hydroxylase), while 58.82% carried catE (catechol-2,3-dioxygenase), indicating a strong predisposition for aromatic hydrocarbon degradation. Following turbidimetric screening of 34 bacterial isolates, 11 demonstrating superior growth were selected for gravimetric degradation assessment. Among these, isolate MB 1002 (Pseudomonas nitroreducens) demonstrated the highest degradative capability at 46.92%, followed by MB 751 (Acinetobacter baumannii) at 41.18% and MB 750 (Pseudomonas aeruginosa) at 39.16%. The MB 1002 and MB 751 both were positive for alkB. FTIR analysis revealed that both MB 751 and MB 1002 contribute to diesel degradation, with MB 751 showing stronger oxidation patterns due to the presence of carboxyl functional groups. Due to its superior oxidative capability, MB 751 (designated A. baumannii DUEMBL6) was selected for whole-genome sequencing. The sequence analysis of A. baumannii DUEMBL6 (deposited as JBLODW000000000) revealed: (1) hydrocarbon degradation genes (alkB, ssuD, catechol dioxygenases); (2) 7 biosynthetic gene clusters including siderophores (100% similarity to baumannoferrin); and (3) complete xenobiotic degradation pathways for aliphatic/aromatic compounds. Despite its bioremediation potential, A. baumannii DUEMBL6 harbored 26 antibiotic resistance genes (e.g., blaOXA-338, adeABC efflux pumps) and 33 virulence factors (e.g., csu pilus, biofilm genes), with an 86.1% pathogenicity probability. These findings highlight A. baumannii DUEMBL6's dual role as a promising bioremediation agent and a potential public health risk, necessitating careful strain selection for environmental applications.

Indexed as

Acinetobacter baumanniiBiodegradation, EnvironmentalGasolineGenome, BacterialGenomicsPhylogenySoil MicrobiologySoil PollutantsGasolineSoil Pollutants

Identifiers

PMID41557622
PMCPMC12818619

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.