Evidence map›Paper›PMID 41556698›Full record

ArticlemSystems2026

Integrative multi-omics analysis reveals gut-skin axis mechanisms and novel therapeutic target

Fang Cao, AoNan Liu, Jiaoyang Tong, Cui Guo, Hui Zhang, Yaobin Pang, Kexin Tang, Qianying Yu, Jing Guo

Abstract read
In one paragraph

Article in mSystems, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Fang Cao *Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.ORCID 0000-0001-6506-9015
AoNan Liu *Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Jiaoyang Tong *Shanghai Jiao Tong University School of Medicine, Shanghai, China.
Cui GuoDepartment of Rheumatology and Immunology, First Affiliated Hospital of Army Military Medical University, Chongqing, China.
Hui ZhangChengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Yaobin PangChengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Kexin TangChengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Qianying YuChengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.
Jing GuoChengdu University of Traditional Chinese Medicine, Chengdu, Sichuan, China.

Funding

Central and Local Goverments Lead the Project 24ZYZYTS0310National Natural Science Foundation of China 82074443Sichuan Provincial central of Traditional Chinese Medicine WXLH202403001
6 · The paper itself

Abstract

The gut-skin axis represents a critical but poorly understood pathway in atopic dermatitis (AD) pathogenesis. This study aimed to establish causal relationships between gut microbiota and AD risk while identifying key molecular bridges and therapeutic targets. We integrated multiple analytical approaches, including single-cell RNA sequencing analysis of skin biopsies from five AD patients and four healthy controls, intercellular communication network analysis, pseudotime trajectory inference, reverse drug prediction, molecular docking, and molecular dynamics simulations. Analysis revealed increased keratinocyte heterogeneity and enhanced immune cell communication in atopic dermatitis (AD) samples. Intersection analysis between gut microbial metabolite-associated genes and skin pathology-related genes identified seven key bridging genes ( IMPORTANCE: Genetic-level evidence of gut microbiota causality in atopic dermatitis: this study established a causal relationship between specific gut microbiota and the risk of atopic dermatitis at the genetic level, providing strong genetic evidence for the "gut-skin axis" theory. GALE is identified as a novel therapeutic target with redefined methotrexate mechanism: molecular docking study unexpectedly found that GALE binding affinity of MTX was significantly higher than that of its classical target TYMS, suggesting that GALE may be an important but previously unrecognized target of MTX in the treatment of AD. Multi-omics integration framework reveals increased keratinocyte heterogeneity: integrating single-cell RNA sequencing and computational pharmacology provided a cellular and molecular basis for understanding the characteristics of chronicity and recurrence of the disease.

Indexed as

Dermatitis, AtopicGastrointestinal MicrobiomeSkinFemaleHumansMethotrexateMolecular Docking SimulationMolecular Dynamics SimulationMultiomicsMethotrexateatopic dermatitisbioinformaticscomputational pharmacologygut microbiotagut-skin axis

Identifiers

PMID41556698
PMCPMC12817900

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.