Evidence map›Paper›PMID 41556401›Full record

ArticleHuman molecular genetics2026

SUPT16H-associated neurodevelopmental disorder and neurocristopathy: genetic and phenotypic spectrum.

Eunhye Lee, Seungmin Sim, Hee-Jung Choi, Eugene Y Liang, Carolyn Le, Roya Bina, Ryan Cohen, Elizabeth George, Soo Yeon Kim, Gifty Bhat and 42 more

Abstract read
In one paragraph

Article in Human molecular genetics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

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1 citing paper in PubMed.

  1. Article
4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

52 authors.

Eunhye LeeDepartment of Biomedical Science, Kangwon National University, Chuncheon 24341, Republic of Korea.
Seungmin SimDepartment of Biomedical Science, Kangwon National University, Chuncheon 24341, Republic of Korea.
Hee-Jung ChoiSchool of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea.ORCID 0000-0002-1167-1526
Eugene Y LiangDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Carolyn LeDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Roya BinaDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Ryan CohenDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Elizabeth GeorgeDepartment of Radiology and Biomedical Imaging, University of California, San Francisco, CA 94143, United States.
Soo Yeon KimDepartment of Genomic Medicine, Seoul National University Hospital, Seoul 03080, Republic of Korea.
Gifty BhatDepartment of Pediatrics, University of Illinois Chicago, Chicago, IL 60607, United States.
Erin FalseyDepartment of Pediatrics, University of Illinois Chicago, Chicago, IL 60607, United States.
Richard SidlowDepartment of Medical Genetics and Metabolism, Valley Children's Hospital, Madera, CA 93636, United States.
Kristin ClinardDivision of Genetics and Metabolism, Department of Pediatrics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, United States.
Shay Ben-ShacharClalit Research Institute, Ramat Gan, Israel.
Eleina EnglandClalit Research Institute, Ramat Gan, Israel.
Beatriz MenendezDivision of Medical Genetics, University of Illinois Chicago, Chicago, IL 60612, United States.
Isabella HermanBoys Town National Research Hospital, Boys Town, NE 68010, United States.
Shelly NielsenDepartment of Genetic Medicine, Munroe-Meyer Institute, University of Nebraska Medical Center, Omaha, NE 68106, United States.
Jaya PunethaGeneDx, Gaithersburg, MD 20877, United States.
Priya BholaDepartment of Genetics, Children's Hospital of Eastern Ontario, Ottawa, ON, K1H 8L1, Canada.
J Austin HammGenetic Center, East Tennessee Children's Hospital,  Knoxville, TN 37916, United States.
Megan A KeeneyGenetic Center, East Tennessee Children's Hospital,  Knoxville, TN 37916, United States.
Nike SitzmanNicklaus Children's Hospital, Miami, FL 33155, United States.
Sara BergerDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, United States.
Lakshmi MehtaDepartment of Pediatrics, Columbia University Irving Medical Center, New York, NY 10032, United States.
Alison J ConnRush University Medical Center, Chicago, IL 60612, United States.
Lilian DownieVictorian Clinical Genetics Service, Murdoch Children's Research Institute, Parkville, VIC 3052, Australia.
Myla AshfaqDepartment of Pediatrics, The University of Texas Health Science Center at Houston, Houston, TX 77030, United States.
Hope NorthrupDepartment of Pediatrics, The University of Texas Health Science Center at Houston, Houston, TX 77030, United States.
Ange-Line BruelLaboratoire de Génomique Médicale, Centre Neomics, Inserm UMR1231 équipe GAD, Université Bourgogne Europe, CHU Dijon Bourgogne, Dijon, France.
Sylvie OdentGénétique Clinique, Centre de Référence Maladies Rares CLAD-Ouest, ERN-ITHACA, FHU GenOMedS, CHU de Rennes, Rennes, France.ORCID 0000-0002-0635-5940
Justin O SzotRandwick Genomics Laboratory, NSW Health Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia.
Noelia Nunez MartinezRandwick Genomics Laboratory, NSW Health Pathology, Prince of Wales Hospital, Randwick, NSW 2031, Australia.
Sunju ParkDepartment of Molecular Bioscience, Kangwon National University, Chuncheon 24341, Republic of Korea.
Julie RefkinUniversity of Vermont, Burlington, VT 05401, United States.
Jean-Marc GoodDivision of Genetic Medicine, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne 1011, Switzerland.
Fabienne MaurerDivision of Genetic Medicine, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne 1011, Switzerland.
Cédric Le CaignecDivision of Genetic Medicine, Lausanne University Hospital (CHUV) and University of Lausanne, Lausanne 1011, Switzerland.
David J ComanDepartment of Metabolic Medicine, Queensland Children's Hospital, South Brisbane QLD 4101, Australia.
Erin AndersonWesley Research Institute, The Wesley Hospital, Auchenflower QLD 4066, Australia.
Linda J RichardsDepartment of Neuroscience, Washington University in St. Louis, St Louis, MO 63110, United States.
Ryan J DeanDepartment of Neuroscience, Washington University in St. Louis, St Louis, MO 63110, United States.
Caleb YangDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Chulwon ChoiSchool of Biological Sciences, Seoul National University, Seoul 08826, Republic of Korea.
Byung Joon HwangDepartment of Molecular Bioscience, Kangwon National University, Chuncheon 24341, Republic of Korea.
Jin Sook LeeDepartment of Pediatrics, Seoul National University Children's Hospital, Seoul 03080, Republic of Korea.
William B DobynsDepartment of Pediatrics, University of Minnesota, Minneapolis, MN 55454, United States.
Murim ChoiDepartment of Biomedical Sciences, Seoul National University College of Medicine, Seoul 03080, Republic of Korea.ORCID 0000-0002-9195-1455
Elliott H SherrDepartment of Neurology, University of California, San Francisco, CA 94158, United States.
Jong-Hee ChaeDepartment of Pediatrics, Seoul National University College of Medicine, Seoul National University Children's Hospital, Seoul 03080, Republic of Korea.ORCID 0000-0002-9162-0138
Yun KeeDivision of Biomedical Convergence, Kangwon National University, Chuncheon 24341, Republic of Korea.ORCID 0000-0003-2764-1468
Emanuela ArgilliDepartment of Neurology, University of California, San Francisco, CA 94158, United States.ORCID 0000-0002-6575-7501

Funding

De novo copy number variation and gene discovery in human brain malformationsR01NS058721 · NINDS · UNIVERSITY OF CHICAGO · PI ARGILLI, EMANUELA · 2008 to 2025
$10.9M
Emergence of activity patterns in the cerebral cortex and their influence on brain circuit development and functionDP1NS127279 · NINDS · WASHINGTON UNIVERSITY · PI RICHARDS, LINDA J · 2021 to 2025
$5.5M
NINDS NIH HHS DP1 NS127279NINDS NIH HHS R01 NS058721
6 · The paper itself

Abstract

SUPT16H encodes a subunit of the FACT (FAcilitates Chromatin Transcription) complex, a histone chaperone essential for maintaining chromatin integrity during transcription, replication, and DNA repair. Pathogenic de novo SUPT16H missense variants have previously been linked to neurodevelopmental disorders in eight individuals. Here, we expand the genotypic and phenotypic spectrum by identifying 24 additional individuals harboring ultrarare heterozygous missense or truncating variants, who share overlapping clinical features including intellectual disability, autism spectrum disorder, hypotonia, and characteristic craniofacial dysmorphism. To elucidate the underlying mechanisms, we generated a supt16h knockout zebrafish model using CRISPR/Cas9. The supt16h loss-of-function (LOF) model recapitulated key patient phenotypes such as developmental delay, craniofacial anomalies, and hypotonia. Structural and functional analyses of selected SUPT16H variants demonstrated differential rescue of developmental defects in supt16h-deficient embryos, indicating variant-specific LOF effects in vivo. The presence of non-neural manifestations, including facial and ear anomalies, suggested a role for SUPT16H in neural crest development. Consistently, supt16h loss impaired neural crest cell migration and differentiation and triggered p53-dependent apoptosis in the central nervous system (CNS) and neural crest-derived pharyngeal arches. Notably, supt16h deficiency impaired oligodendrocyte specification in the CNS and perturbed differentiation of neural crest-derived Schwann cells in the peripheral nervous system, providing a plausible basis for hypotonia. These findings uncover a previously unrecognized role of SUPT16H in neural crest development, linking chromatin regulation to neural crest-derived lineage specification and differentiation, thereby defining SUPT16H deficiency as a neurocristopathy that broadens the clinical and mechanistic landscape of SUPT16H-associated disorders.

Indexed as

DNA-Binding ProteinsNeurodevelopmental DisordersAnimalsCraniofacial AbnormalitiesDisease Models, AnimalFemaleHumansIntellectual DisabilityMaleMutation, MissenseNeural CrestPhenotypeZebrafishDNA-Binding Proteinsneurocristopathyneurodevelopmental disorderspectral disordersSUPT16H variantszebrafish

Identifiers

PMID41556401
PMCPMC12969843

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.