Evidence map›Paper›PMID 41554751›Full record

ArticleNature communications2026

G9a-mediated H3K9me2 orchestrates intestinal epithelial regeneration through epigenetic silencing of cell cycle-related genes.

Jingzhou Chen, Xiaoliang Shi, Xinyi Zhou, Ju Huang, Linghao Xia, Zhen Hu, Jiaji Gu, Xiaole Sheng, Xiaolong Ge, Xudong Fu and 5 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Jingzhou Chen *Institute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Xiaoliang Shi *Institute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Xinyi Zhou *Department of Colorectal Surgery and Oncology (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Ju Huang *Liangzhu Laboratory, Zhejiang University, Hangzhou, China.
Linghao XiaCollege of Life Science, Zhejiang University, Hangzhou, China.
Zhen HuInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Jiaji GuInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Xiaole ShengInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Xiaolong GeInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-9833-1806
Xudong FuLiangzhu Laboratory, Zhejiang University, Hangzhou, China.ORCID 0000-0001-7024-0200
Qian XiaoDepartment of Colorectal Surgery and Oncology (Key Laboratory of Cancer Prevention and Intervention, China National Ministry of Education), The Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.ORCID 0000-0002-0120-2371
Wei ZhouInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China.
Rongpan BaiInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China. rpbai@zju.edu.cn.ORCID 0000-0002-0687-2729
Zhengping XuInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China. zpxu@zju.edu.cn.ORCID 0000-0003-0922-736X
Jinghao ShengInstitute of Environmental Medicine and Department of General Surgery, Sir Run Run Shaw Hospital, Zhejiang University School of Medicine, Hangzhou, China. jhsheng@zju.edu.cn.ORCID 0000-0002-1207-7449

Funding

National Natural Science Foundation of ChinaNatural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) LR24H030001Natural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) LR25H260001
6 · The paper itself

Abstract

Histone modifications play an important role in intestinal homeostasis and regeneration. Here, we identify histone H3 lysine 9 di-methylation (H3K9me2) as an epigenetic regulator of intestinal epithelial repair through mass spectrometry-based screening of histone modifications. We then find that H3K9me2 and its methyltransferase G9a levels are reduced during acute injury and progressively increase during regeneration in both mouse models and human clinical samples. Genetic ablation of G9a in intestinal epithelial cells or pharmacological inhibition of its enzymatic activity substantially impairs intestinal regeneration and reduces survival following irradiation. Mechanistically, integrative genomic analyses reveal that G9a-mediated H3K9me2 suppresses chromatin accessibility and transcriptional activity of cell cycle arrest genes, including Rb1cc1, Rb1, Cdkn1a, and Pten, thereby promoting intestinal stem cell proliferation. Furthermore, we elucidate that IL-4-STAT6 signaling controls G9a expression during regeneration, i.e., IL-4 upregulation leads to STAT6 phosphorylation and subsequent transcriptional activation of G9a. These findings establish the IL-4-STAT6-G9a-H3K9me2 regulatory axis as a critical epigenetic mechanism controlling intestinal regeneration with therapeutic potential for gastrointestinal disorders.

Indexed as

Epigenesis, GeneticHistocompatibility AntigensHistone-Lysine N-MethyltransferaseHistonesIntestinal MucosaRegenerationAnimalsCell CycleCell ProliferationCyclin-Dependent Kinase Inhibitor p21Epithelial CellsGene SilencingHumansLysineMethylationMiceCyclin-Dependent Kinase Inhibitor p21EHMT2 protein, humanG9a protein, mouseH3K9me2Histocompatibility AntigensHistone-Lysine N-MethyltransferaseHistonesLysinePTEN PhosphohydrolasePten protein, mouseSTAT6 Transcription Factor

Identifiers

PMID41554751
PMCPMC12923774

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.