Evidence map›Paper›PMID 41553961›Full record

ArticleJournal of vascular research2026

Dynamic Gene Expression Signatures across Stages of Carotid Plaque Calcification.

Hiroyuki Katano, Tomoyasu Yamanaka, Teishiki Shibata, Yasuhide Inoue, Yusuke Nishikawa, Shigeki Yamada, Motoki Tanikawa, Kazuo Yamada, Mitsuhito Mase

Abstract readComparative Study
In one paragraph

Article in Journal of vascular research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hiroyuki KatanoDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan, katano@med.nagoya-cu.ac.jp.
Tomoyasu YamanakaDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Teishiki ShibataDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Yasuhide InoueDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Yusuke NishikawaDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Shigeki YamadaDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Motoki TanikawaDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Kazuo YamadaDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.
Mitsuhito MaseDepartment of Neurosurgery, Nagoya City University Graduate School of Medical Sciences, Nagoya, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

<p>Introduction: The aims of the study were to elucidate gene expression changes associated with different stages of calcification in carotid artery plaques and clarify the dynamic biological processes underlying plaque maturation.

methodsCarotid plaque specimens were classified into four groups - mildly, moderately, severely, and very severely calcified - based on calcium scores derived from computed tomography. RNA-Seq (SMART-Seq) analysis and quantitative RT-PCR validation were performed to assess expression profiles of genes related to vascular smooth muscle cell (VSMC) phenotype, inflammation, extracellular matrix (ECM), and calcification.

resultsMildly calcified plaques exhibited elevated inflammatory (CD68, TNF) and osteogenic (RUNX2, SPP1/OPN) gene expression. Moderately calcified plaques showed transient suppression of these genes with upregulation of ELN, suggesting structural stabilization. In severely calcified plaques, osteogenic and inflammatory gene expression persisted, while contractile markers (ACTA2, MYH11) showed limited reactivation. Very severely calcified plaques demonstrated downregulation of VSMC-related genes and selective ECM remodeling, indicating a quiescent, structurally stabilized stage.

conclusionCarotid plaque calcification represents a dynamic, multistage process characterized by reversible and irreversible transitions in VSMC phenotype and ECM composition. These findings emphasize that calcification is not merely passive deposition but reflects coordinated cellular and molecular remodeling, which may inform future stage-specific therapeutic strategies. </p>.

Indexed as

Carotid ArteriesCarotid Artery DiseasesPlaque, AtheroscleroticTranscriptomeVascular CalcificationExtracellular MatrixGene Expression ProfilingHumansMuscle, Smooth, VascularMyocytes, Smooth MusclePhenotypeRNA-SeqSeverity of Illness IndexCalcificationCarotid endarterectomyCarotid plaqueGene expressionVascular smooth muscle cells

Identifiers

PMID41553961
PMCPMC12959890

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.