Evidence map›Paper›PMID 41550925›Full record

ArticleFrontiers in immunology2025

Gut microbiome composition influences immunologic alterations in the blood and gut of HIV-positive and HIV-negative men who have sex with men.

Charles Preston Neff, Janet Siebert, Mallory Karr, Ricky Lippincott, Rachel Kvaal, Amy T Noe, Elena Wall, Nichole Nusbacher, Suzanne Fiorillo, Blair P Fennimore and 3 more

Abstract read
In one paragraph

Article in Frontiers in immunology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Charles Preston NeffDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Janet SiebertDepartment of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, United States.
Mallory KarrDepartment of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, United States.
Ricky LippincottDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Rachel KvaalDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Amy T NoeDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Elena WallDepartment of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, United States.
Nichole NusbacherDepartment of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, United States.
Suzanne FiorilloDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Blair P FennimoreDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Thomas B CampbellDepartment of Medicine, University of Colorado Anschutz, Aurora, CO, United States.
Catherine Lozupone *Department of Biomedical Informatics, University of Colorado Anschutz, Aurora, CO, United States.
Brent E Palmer *Department of Medicine, University of Colorado Anschutz, Aurora, CO, United States.

Funding

Colorado Clinical and Translational Sciences Institute (CCTSI)UM1TR004399 · NCATS · UNIVERSITY OF COLORADO DENVER · PI JANINE A HIGGINS, RONALD J. SOKOL · 2023 to 2026
$30.7M
Gut microbiome effects on intestinal barrier function and metabolic syndrome in HIV positive men who have sex with menR01DK131581 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI Sean P Colgan, Catherine Lozupone · 2022 to 2026
$3.4M
Diet/gut Microbiome Interaction Influence Inflammatory Disease in HIV PatientsR01DK108366 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2015 to 2019
$3.0M
Factors mediating gut microbiota dysbiosis and metabolic disease in HIV patientsR01DK104047 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI LOZUPONE, CATHERINE, PALMER, BRENT E · 2014 to 2018
$2.1M
A High-memory Supercomputer for Proteomics, Text Mining and Microbiome ResearchS10OD012300 · OD · UNIVERSITY OF COLORADO · PI AHN, NATALIE G. · 2013 to 2013
$1.9M
HIV-associated gut microbiome affects lung immunity and pneumococcal immune responseR01HL138639 · NHLBI · UNIVERSITY OF COLORADO DENVER · PI CAMPBELL, THOMAS B., LOZUPONE, CATHERINE · 2017 to 2020
$1.9M
Interactions of Intestinal Epithelial Cells, The Innate Immune System and Gut Microbiota During DysbiosisK01DK121864 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI NEFF, CHARLES PRESTON · 2019 to 2021
$585k
Effect of ILC3 loss on epithelial barrier function during ART Treated HIV infectionR21DK138855 · NIDDK · UNIVERSITY OF COLORADO DENVER · PI NEFF, CHARLES PRESTON · 2024 to 2025
$429k
NCATS NIH HHS UM1 TR004399NHLBI NIH HHS R01 HL138639NIDDK NIH HHS K01 DK121864NIDDK NIH HHS R01 DK104047NIDDK NIH HHS R01 DK108366NIDDK NIH HHS R01 DK131581NIDDK NIH HHS R21 DK138855NIH HHS S10 OD012300
6 · The paper itself

Abstract

Background: HIV infection and factors associated with sexual activity among men who have sex with men (MSM) can dysregulate relationships between the gut microbiome and immune system. Methods: To explore these relationships in depth, blood and colonic biopsy samples from HIV+ and HIV- MSM and non-MSM were analyzed using Cytometry by Time of Flight (CyTOF). Immune profiles were then integrated with gut microbiome composition and MSM-related behaviors. Results: HIV infection status influenced immune cell composition in colonic biopsies, marked by a loss of CD4⁺ CD103⁺ and CD8⁺CD103⁺ tissue-resident T cells and group 3 innate lymphoid cells (ILC3s). In the blood, HIV status was linked to reductions in circulating group 2 innate lymphoid cells (ILC2s), and naïve CD8⁺ T cells, while mucosal-associated invariant T (MAIT) cells were reduced in MSM engaging in high-risk sexual behaviors regardless of HIV status. Network analysis revealed distinct, tissue-specific relationships between immune cell populations and gut microbial taxa, further shaped by both HIV infection and MSM-associated factors. Conclusions: These findings provide new insights into host:microbe interactions, with implications for immune regulation, HIV persistence, and transmission among MSM.

Indexed as

Gastrointestinal MicrobiomeHIV InfectionsHomosexuality, MaleAdultHumansMaleantiretroviral therapycolonicCyTOFHIVinflammationmen who have sex with menmicrobiomesexual behavior

Identifiers

PMID41550925
PMCPMC12808405

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.