Evidence map›Paper›PMID 41547900›Full record

ArticleNature communications2026

Molecular determinants of Smc5/6 association with DNA junctions.

Jeremy T-H Chang, Victoria Miller-Browne, Gabriella N L Chua, Jian Zheng, Emily C Beckwitt, Shibai Li, Bryce J Katch, Michael E O'Donnell, Shixin Liu, Xiaolan Zhao

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Jeremy T-H Chang *Laboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0002-2680-4934
Victoria Miller-Browne *Molecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-7845-1985
Gabriella N L ChuaLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Jian ZhengMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-6128-026X
Emily C BeckwittLaboratory of DNA Replication, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0009-0007-1497-9896
Shibai LiMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA.ORCID http://orcid.org/0000-0001-9293-6006
Bryce J KatchLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA.
Michael E O'DonnellLaboratory of DNA Replication, Howard Hughes Medical Institute, The Rockefeller University, New York, NY, USA.ORCID http://orcid.org/0000-0001-9002-4214
Shixin LiuLaboratory of Nanoscale Biophysics and Biochemistry, The Rockefeller University, New York, NY, USA. shixinliu@rockefeller.edu.ORCID http://orcid.org/0000-0003-4238-7066
Xiaolan ZhaoMolecular Biology Program, Memorial Sloan Kettering Cancer Center, New York, NY, USA. zhaox1@mskcc.org.ORCID http://orcid.org/0000-0002-8302-6905

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI SELWYN M VICKERS · 1985 to 2026
$347.4M
Virology Research Program (Program 4)P30CA016086 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI Deborah F. Tate · 1985 to 2026
$201.5M
Weill Cornell/Rockefeller/Sloan Kettering MST ProgramT32GM152349 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI KATHARINE C HSU · 2024 to 2026
$6.6M
Regulation of genome replication, recombination, and stress responseR35GM145260 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI Xiaolan Zhao · 2022 to 2026
$3.6M
Biochemical Mechanism and Structure of the Eukaryotic Replication ForkR01GM115809 · NIGMS · ROCKEFELLER UNIVERSITY · PI O'DONNELL, MICHAEL E · 2015 to 2022
$2.6M
Biochemistry of Eukaryotic Replication Fork and DNA RepairR35GM148159 · NIGMS · ROCKEFELLER UNIVERSITY · PI MICHAEL E O'DONNELL · 2023 to 2026
$1.7M
Biophysical Determinants of the Nucleosome as an Activity Center for Chromatin RegulatorsR01GM149862 · NIGMS · ROCKEFELLER UNIVERSITY · PI Shixin Liu · 2023 to 2026
$1.4M
Molecular Biophysics Training ProgramT32GM132081 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI Olga Boudker, David Eliezer · 2020 to 2026
$1.3M
Single-molecule dissection of a tumor- and virus-suppressing Smc complex involved in genome maintenanceF30CA275379 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI CHANG, JEREMY TZU-HUAI · 2022 to 2025
$213k
Single-molecule Investigation of the Interaction Between MeCP2 and ChromatinF31MH132306 · NIMH · ROCKEFELLER UNIVERSITY · PI CHUA, GABRIELLA N. L. · 2022 to 2024
$143k
NCI NIH HHS F30 CA275379NCI NIH HHS P30 CA008748NCI NIH HHS P30 CA016086NIGMS NIH HHS R01 GM115809NIGMS NIH HHS R01 GM149862NIGMS NIH HHS R35 GM145260NIGMS NIH HHS R35 GM148159NIGMS NIH HHS T32 GM132081NIGMS NIH HHS T32 GM152349NIMH NIH HHS F31 MH132306U.S. Department of Health & Human Services | NIH | National Institute of General Medical Sciences (NIGMS) T32GM132081U.S. Department of Health & Human Services | NIH | NCI | Division of Cancer Epidemiology and Genetics, National Cancer Institute (National Cancer Institute Division of Cancer Epidemiology and Genetics) F30CA275379
6 · The paper itself

Abstract

Smc5/6 is an essential genome maintenance complex that interacts with double-stranded (ds) DNA, single-stranded (ss) DNA, and ss-dsDNA junctions. DNA association underlies Smc5/6's functions in managing intermediates generated during genome replication and repair. However, the mechanisms of this activity are not fully understood. Here, we report a single-molecule study examining Smc5/6 association with a dsDNA substrate containing a ssDNA gap with defined 3' and 5' junctions. We found that Smc5/6 associates with both 3' and 5' junctions but prefers the 3' junction in the presence of the ssDNA-binding complex RPA. Further, Smc5/6's junction association frequency and dwell time are regulated by two non-SMC subcomplexes and DNA binding residues of Smc6. Moreover, Smc5/6 prefers binding to junction sites free of the sliding clamp PCNA over those occupied with it. These results suggest that Smc5/6 utilizes its multiple structural modules to associate with junction sites in coordination with other genome maintenance factors.

Indexed as

Cell Cycle ProteinsDNASchizosaccharomyces pombe ProteinsBinding SitesDNA, FungalDNA ReplicationDNA, Single-StrandedProliferating Cell Nuclear AntigenProtein BindingReplication Protein ASchizosaccharomycesCell Cycle ProteinsDNADNA, FungalDNA, Single-StrandedProliferating Cell Nuclear AntigenReplication Protein ASchizosaccharomyces pombe ProteinsSmc5 protein, S pombesmc6 protein, S pombe

Identifiers

PMID41547900
PMCPMC12864806

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.