Evidence map›Paper›PMID 41546867›Full record

ArticleCell reports2026

Uncovering genetic interactions in the DNA repair network in response to endogenous damage and ionizing radiation.

Benjamin Nebenfuehr, Lynn Sanford, Erin R Taylor, Kerri Ball, Catherine E Woods-Killam, Hannah I Ghasemi, Bruce Proctor, Raquel Ortega, Colin Sempeck, Robin D Dowell and 1 more

Abstract read
In one paragraph

Article in Cell reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Review
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Benjamin NebenfuehrUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Lynn SanfordUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA; University of Colorado Boulder, BioFrontiers Institute, Boulder, CO 80309, USA.
Erin R TaylorUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Kerri BallUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Catherine E Woods-KillamUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Hannah I GhasemiUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Bruce ProctorUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Raquel OrtegaUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Colin SempeckUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA.
Robin D DowellUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA; University of Colorado Boulder, BioFrontiers Institute, Boulder, CO 80309, USA.
Nausica ArnoultUniversity of Colorado Boulder, Department of Molecular, Cellular, and Developmental Biology, Boulder, CO 80309, USA. Electronic address: nausica.arnoult@colorado.edu.

Funding

TRAINING IN SIGNAL TRANSDUCTION &CELL CYCLE REGULATIONT32GM008759 · NIGMS · UNIVERSITY OF COLORADO AT BOULDER · PI AHN, NATALIE G. · 2000 to 2020
$5.9M
Predoctoral Training Program in Signaling and Cellular Regulation INCLUDE Down Syndrome SupplementT32GM142607 · NIGMS · UNIVERSITY OF COLORADO · PI Sabrina Leigh Spencer, Tin Tin Su · 2021 to 2026
$3.6M
Mediator kinases as interferon antagonists in Down SyndromeR01AI156739 · NIAID · UNIVERSITY OF COLORADO · PI TAATJES, DYLAN J · 2020 to 2024
$2.4M
Deciphering the role of heterochromatin in telomere function and maintenance mechanismsR35GM143108 · NIGMS · UNIVERSITY OF COLORADO · PI ARNOULT, NAUSICA C. · 2021 to 2025
$1.9M
Deciphering the function of the APE2 nuclease during repair by alternative end-joining and its role in HR-deficient cellsR01CA266100 · NCI · UNIVERSITY OF COLORADO · PI Nausica C. Arnoult · 2022 to 2026
$1.7M
NCI NIH HHS R01 CA266100NIAID NIH HHS R01 AI156739NIGMS NIH HHS R35 GM143108NIGMS NIH HHS T32 GM008759NIGMS NIH HHS T32 GM142607
6 · The paper itself

Abstract

Genomic integrity relies on a complex network of DNA damage response (DDR) pathways that repair endogenous and exogenous lesions, yet how individual factors operate within this broader landscape remains unclear. We performed a large-scale combinatorial CRISPR-Cas9 knockout screen targeting 461 DNA repair genes, disrupting over 100,000 gene combinations under basal conditions and after ionizing radiation (IR). This approach uncovered thousands of genetic interactions spanning pathways that respond to endogenous damage and those specific to double-strand break repair. From this dataset, we validated both positive and negative interactions under basal and irradiated conditions, including a synthetic lethal relationship between MRE11A and the E3 ligase UBR5, a role for Ku70/80 in preventing unscheduled nuclease activity at telomeres, an IR-specific vulnerability upon co-disruption of CYREN and PARG, and a link between CYREN-mediated radioresistance and innate immunity. This resource enables mechanistic insight and reveals therapeutic vulnerabilities in DNA-repair-deficient cancers.

Indexed as

DNA DamageDNA RepairEpistasis, GeneticRadiation, IonizingCRISPR-Cas SystemsDNA Breaks, Double-StrandedHumansKu AutoantigenMRE11 Homologue ProteinTelomereUbiquitin-Protein LigasesKu AutoantigenMRE11 Homologue ProteinUbiquitin-Protein Ligasescombinatorial screenCP: molecular biologyCRISPRCYRENDNA damageDNA repairKuMRE11telomeresUBR5

Identifiers

PMID41546867
PMCPMC12970561

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.