Evidence map›Paper›PMID 41545737›Full record

ArticleEuropean journal of pediatrics2026

Identification of novel variants in the ARID1B gene causing Coffin-Siris syndrome.

Yan Ge, Xin-Yi Zhang, Xu Han, Jing-Tao Zhang, Wei-Meng Ma, Hao-Chun Yang, Hui-Qian Cao, Wei-Yu Lan, Wei Dong, Yang Hu and 3 more

Abstract read
In one paragraph

Article in European journal of pediatrics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
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1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Yan GeInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325000, China.
Xin-Yi ZhangInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325000, China.
Xu HanHangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, 310000, Zhejiang Province, China.
Jing-Tao ZhangChildren's Medical Center, Peking University First Hospital, Beijing, 102600, China.
Wei-Meng MaChildren's Medical Center, Peking University First Hospital, Beijing, 102600, China.
Hao-Chun YangInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325000, China.
Hui-Qian CaoFourth Clinical College of Henan Medical University, Xinxiang, 453000, Henan, China.
Wei-Yu LanHangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, 310000, Zhejiang Province, China.
Wei DongHangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, 310000, Zhejiang Province, China.
Yang HuHangzhou Institute of Medicine, Chinese Academy of Sciences, Hangzhou, 310000, Zhejiang Province, China.
Yan-Ling YangChildren's Medical Center, Peking University First Hospital, Beijing, 102600, China. organic.acid@vip.126.com.
Zhong-Sheng SunInstitute of Genomic Medicine, Wenzhou Medical University, Wenzhou, 325000, China. sunzs@biols.ac.cn.
Ming ShenMedical Innovation Research Division, Chinese PLA General Hospital, Beijing, 100853, China. shenmingzky@163.com.

Funding

Baoding Science and Technology Bureau Science and Technology Project No. 2041ZF275National Key Research and Development Program of China No. 2017YFC100170National Key Research and Development Program of China No. 2022YFC2703400
6 · The paper itself

Abstract

Coffin-Siris Syndrome (CSS) is a neurodevelopmental disorder caused by variants in genes encoding BRG1- and BRM-associated factor (BAF) chromatin-remodeling complex. ARID1B gene variants are the most common cause of CSS. This study aimed to identify novel pathogenic ARID1B variants in patients clinically diagnosed with CSS and to explore their pathogenic role. In this study, eight patients clinically diagnosed with CSS were enrolled, and whole exome sequencing (WES) was performed to identify potential pathogenic variants. Heterozygous variants in the ARID1B gene were identified in six patients, including one previously reported pathogenic nonsense variant and five novel pathogenic truncating variants. The combined annotation-dependent depletion (CADD) scores of the five novel variants were significantly above the mutation significance cutoff (MSC), suggesting their potential pathogenicity. According to the guidelines of the American College of Medical Genetics and Genomics (ACMG), these five novel variants were classified as pathogenic.

conclusionsOur findings add five novel variants to the list of known pathogenic variants of the ARID1B gene. This study further clarifies an enhanced connection between ARID1B gene variants and CSS and expands the variant spectrum of CSS. WHAT IS KNOWN: • Coffin-Siris syndrome (CSS) is a rare neurodevelopmental disorder characterized by developmental delay, intellectual disability, and hypoplasia of the fifth digits or nails. • Pathogenic variants in genes encoding subunits of the BAF chromatin-remodeling complex are the major genetic causes of CSS, with ARID1B being the most frequently mutated gene, and most variants of which are truncating and lead to haploinsuffucuency. WHAT IS NEW: • Five novel heterozygous truncating variants in ARID1B were identified in eight patients clinically diagnosed with Coffin-Siris syndrome. • All novel variants showed high CADD scores and were classified as pathogenic according to ACMG guidelines.

Indexed as

Abnormalities, MultipleDNA-Binding ProteinsFaceHand Deformities, CongenitalIntellectual DisabilityMicrognathismNeckTranscription FactorsChildChild, PreschoolExome SequencingFemaleHumansInfantMaleMutationARID1B protein, humanDNA-Binding ProteinsTranscription FactorsARID1BCoffin–Siris syndromePedigree analysisWhole exome sequencing

Identifiers

PMID41545737
PMCPMC12811165

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.