Evidence map›Paper›PMID 41545424›Full record

ArticleScientific data2026

Temporal multiomics gene expression data across human embryonic stem cell-derived polyhormonal cell differentiation.

Abdurrahman Keskin, Hani J Shayya, Achchhe Patel, Dario Sirabella, Barbara Corneo, Marko Jovanovic

Abstract readDataset
In one paragraph

Article in Scientific data, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Abdurrahman KeskinDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA.ORCID http://orcid.org/0000-0002-5016-6864
Hani J ShayyaMortimer B. Zuckerman Mind, Brain and Behavior Institute, Columbia University, New York, NY, 10027, USA.
Achchhe PatelStem Cell Core, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Dario SirabellaStem Cell Core, Columbia University Irving Medical Center, New York, NY, 10032, USA.
Barbara CorneoStem Cell Core, Columbia University Irving Medical Center, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0001-5189-6749
Marko JovanovicDepartment of Biological Sciences, Columbia University, New York, NY, 10027, USA. mj2794@columbia.edu.

Funding

Extensive multiplexing of protein nucleic-acid interactions to comprehensively study gene expression regulation from chromatin to mRNA degradationR01HG012216 · NHGRI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI GUTTMAN, MITCHELL, JOVANOVIC, MARKO · 2022 to 2025
$3.1M
Defining the programmed proteome rejuvenation underlying gametogenesisR01AG071869 · NIA · UNIVERSITY OF CALIFORNIA BERKELEY · PI BRAR, GLORIA ANN, JOVANOVIC, MARKO · 2021 to 2025
$2.9M
Regulation of Protein Production Dynamics:RNA Binding Proteins and the Ribosome CodeR35GM128802 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI JOVANOVIC, MARKO · 2018 to 2022
$2.3M
How dynamic molecular interactions of RNA Binding Proteins drive post-transcriptional gene expression changesR35GM152258 · NIGMS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Marko Jovanovic · 2024 to 2026
$1.6M
National Science Foundation (NSF) award 2224211NIGMS NIH HHS R35 GM152258U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01AG071869U.S. Department of Health & Human Services | National Institutes of Health (NIH) R01HG012216U.S. Department of Health & Human Services | National Institutes of Health (NIH) R35GM128802
6 · The paper itself

Abstract

Human embryonic stem cells (hESCs) provide a powerful in vitro model to study lineage specification and the regulatory programs underlying early human development. Here, we present a high-resolution, temporal multi-omics dataset tracking mRNA, translation, and protein expression dynamics during hESC differentiation into definitive endoderm and subsequent polyhormonal (PH) cells, a key pancreatic lineage. RNA-seq, ribosome profiling, and quantitative mass spectrometry-based proteomics were performed on matched samples collected at ten time points in biological duplicates, allowing detailed characterization of transcriptional, translational, and protein abundance changes over the differentiation timeline. The dataset exhibits high technical quality, with strong reproducibility between replicates and rigorous quality control metrics across all omics platforms. This extensive dataset provides critical insights into the complex regulatory mechanisms driving polyhormonal cell differentiation and serves as a valuable resource for the research community, enabling deeper exploration of mammalian development, endodermal lineage specification, and gene regulation.

Indexed as

Cell DifferentiationHuman Embryonic Stem CellsEndodermHumansMultiomicsProteomicsRibosome Profiling

Identifiers

PMID41545424
PMCPMC12920657

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.