Evidence map›Paper›PMID 41543255›Full record

ArticleMicrobiology resource announcements2026

Modeling neutrophilic iron-oxidizing bacteria: a KBase narrative resource describing newly integrated metabolic reactions.

Gracee K Tothero, Pamela Weisenhorn, Filipe Liu, José P Faria, Christopher S Henry, Clara S Chan

Abstract readCorrected and Republished Article
In one paragraph

Article in Microbiology resource announcements, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

  • Republished from
    2024
5 · Who and what money

Authors and funding

6 authors.

Gracee K TotheroDepartment of Earth Sciences, University of Delaware, Newark, Delaware, USA.ORCID 0000-0001-7792-3880
Pamela WeisenhornArgonne National Laboratory, Lemont, Illinois, USA.ORCID 0000-0003-1844-5502
Filipe LiuArgonne National Laboratory, Lemont, Illinois, USA.ORCID 0000-0001-8701-2984
José P FariaArgonne National Laboratory, Lemont, Illinois, USA.ORCID 0000-0001-9302-7250
Christopher S HenryArgonne National Laboratory, Lemont, Illinois, USA.ORCID 0000-0001-8058-9123
Clara S ChanDepartment of Earth Sciences, University of Delaware, Newark, Delaware, USA.ORCID 0000-0003-1810-4994

Funding

U.S. Department of Energy DE-AC02-06CH11357U.S. Department of Energy DE-SC0021010U.S. Department of Energy DE-SC0023084
6 · The paper itself

Abstract

We present a KBase tutorial narrative demonstrating construction of stoichiometric metabolic models of iron-oxidizing bacteria. The tutorial describes an extended ModelSEED2 framework, which includes support for iron oxidation. These capabilities complement omics analyses by enabling predictions of physiological dynamics, metabolic fluxes, and the role of iron oxidation in environmental systems.

Indexed as

chemolithotrophygenome-scale metabolic modelgeomicrobiology

Identifiers

PMID41543255
PMCPMC12896243

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.