Evidence map›Paper›PMID 41542430›Full record

ArticlebioRxiv : the preprint server for biology2026

Human Neocortical Glutamatergic Neurons Revealed Through Multimodal Profiling.

Rachel Dalley, Sarah Walling-Bell, Jeremy A Miller, Femke Waleboer, Julian Thijssen, Audrey McCutcheon, Emily Gelfand, Matt Mallory, Cristina Radaelli, Xiao-Ping Liu and 130 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

140 authors.

Rachel DalleyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-7461-7845
Sarah Walling-BellAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6995-2681
Jeremy A MillerAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-4549-588X
Femke WaleboerCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0001-6170-5571
Julian ThijssenDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0009-0007-7585-6451
Audrey McCutcheonAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0005-7073-0732
Emily GelfandAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-2175-5894
Matt MalloryAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8744-3837
Cristina RadaelliAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3255-2630
Xiao-Ping LiuAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3449-7601
Scott SawchukAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0001-2557-4321
Lauren AlfilerAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-4847-7900
Julia AndradeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6155-5374
Jeanelle ArizaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0829-7887
Angela AyalaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0002-8512-6851
Katherine BakerAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-5454-8026
Eliza BarkanAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-7871-4327
Stuard BartaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-7180-3466
Kyla BerryAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0632-6322
Darren BertagnolliAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-6626-1567
Kris BickleyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-2828-4282
Madeline BixbyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0008-9907-0338
Krista BlakeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0000-5703-5499
Jasmine BombenAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3965-5373
Krissy BrounerAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-5790-7154
Agata BudzilloAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-2723-3272
Jazmin CamposAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-9384-9913
Trangthanh CardenasAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4738-5062
Daniel CareyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4459-1960
Tamara CasperAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-1638-3651
Anish Bhaswanth ChakkaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-1095-1817
Michael ClarkAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8006-4332
Tom V CoopmansCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0002-4801-5530
Kirsten CrichtonAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-7869-1492
Nick DeeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-2831-9254
Nadezhda I DotsonAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3414-3176
Stan L W DriessensCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0009-0008-6742-2482
Tom EgdorfAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-9059-8904
Lauren EllingwoodAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6037-6438
Chris EnglishWashington National Primate Research Center, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7229-3258
Rachel EnstromAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-0100-927X
Rebecca de FratesAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-7820-093X
Anna A GalakhovaCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0002-5538-0624
Amanda GaryAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-6397-1520
Jessica GloeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8343-3423
Jeff GoldyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-5140-6922
Hong GuAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-2928-9085
Kristen HadleyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4504-8724
Samantha D HastingsAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0008-9107-8597
Tim S HeistekCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0002-4233-8902
Dijon HillAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8879-2476
Windy HoAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6200-9906
Alvin HuangAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0000-9476-8675
Daan C JolCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.
Atlas JordanAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0006-5527-0608
Zoe C JuneauAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8860-5260
Matthew JungertAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0007-6600-9250
Madhav KannanAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0006-5104-4355
Sara KebedeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3775-1583
Ayoub J KhalilCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0001-6817-2720
Lisa KimAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3811-8680
Mean-Hwan KimAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8065-4631
Megan KochAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0008-8271-8572
Ágnes Katalin KocsisDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.ORCID 0000-0003-0810-5694
Matthew KrollAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0126-7618
Aditi KumarAllen Institute for Brain Science; Seattle, WA, 98109.
Gabriela LeonAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0006-0847-2637
Jocelin MaloneAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-0794-4250
Rusty MannAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0226-2069
Michelle MaxwellAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-7434-5667
Medea McGrawAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-5267-489X
Delissa A McMillenAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3413-4424
Eline J MertensCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0001-5174-0306
Verjinia D MetodievaCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0003-1942-5140
Miranda R MooreCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0009-0006-8000-6366
Alice MukoraAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8431-985X
Kamiliam NasirovaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0001-4672-5045
Lindsay NgAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4134-1608
Aaron OldreAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4969-8759
Alana OyamaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4492-0533
Daniel ParkAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3675-7374
Elliot PhillipsAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0008-2762-6608
Christina Alice PomAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-9057-040X
Lydia PotekhinaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8879-7920
Ramkumar RajanbabuAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-7891-7578
Shea T RansfordAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6093-0806
Ingrid RedfordAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0003-7917-3587
Christine RimorinAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-1491-8552
Dana RochaAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0001-2121-8899
Augustin RuizAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8361-5152
David SandmanAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-6968-4859
Natia ShamugiaCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0001-7136-6657
Ana Rios SiglerAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-5094-8073
Josef SulcAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4928-7183
Tjerk P SwinkelsCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.
Michael TieuAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-9286-5623
Éva TothDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.
Alex TranAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0007-7294-0367
Jessica TrinhAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-5064-8898
Herman TungAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0812-3318
Marshall VanNessAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0009-5415-202X
Sara VargasAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0001-6791-6852
Maria Camila VergaraAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0009-0009-8026-8296
Katherine WadhwaniAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-1518-4290
Grace WilliamsAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-8463-2886
Laurens WitterCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0003-2357-0578
Anubhav G AminDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0009-0003-7540-4667
Charles CobbsSwedish Neuroscience Institute, Seattle, WA, USA.ORCID 0000-0001-7688-4293
Richard EllenbogenDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0002-3463-1009
Samuel EmersonDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0009-0009-1994-2878
Manuel FerreiraDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0002-1720-7441
Nathan W GouwensAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8429-4090
Benjamin GrannanDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6029-2821
Ryder P GwinnSwedish Neuroscience Institute, Seattle, WA, USA.ORCID 0000-0002-5849-7975
Jason S HauptmanDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0002-2035-9876
Sander IdemaAmsterdam UMC, location VUmc, Amsterdam 1081 HV, the Netherlands.ORCID 0000-0001-7267-0255
Andrew L KoDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0002-6253-9891
Lauren KruseAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3428-2443
Brian LongAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-7793-5969
David NoskeAmsterdam UMC, location VUmc, Amsterdam 1081 HV, the Netherlands.ORCID 0000-0001-5992-4468
Jeffrey G OjemannDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7580-8934
Anoop PatelDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0001-7078-9535
Jacob J RuzevickDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.
Dan L SilbergeldDepartment of Neurological Surgery, University of Washington, Seattle, WA, USA.ORCID 0000-0001-8833-4221
Kimberly A SmithAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3142-1970
Niels VerburgAmsterdam UMC, location VUmc, Amsterdam 1081 HV, the Netherlands.ORCID 0000-0003-1048-1664
Jack WatersAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-2312-4183
Tim JarskyAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-4399-539X
Boudewijn LelieveldtDepartment of Radiology, Leiden University Medical Center, Leiden, The Netherlands.ORCID 0000-0001-8269-7603
Gábor TamásDepartment of Physiology, Anatomy, and Neuroscience, University of Szeged, Szeged, Hungary.ORCID 0000-0002-7905-6001
Huibert D MansvelderCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0003-1365-5340
Natalia A GoriounovaCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0002-5917-983X
Christiaan P J de KockCenter for Neurogenomics and Cognitive Research, Vrije Universiteit Amsterdam, 1081 HV Amsterdam, the Netherlands.ORCID 0000-0002-6697-0179
Nikolai C DembrowDepartment of Neurobiology and Biophysics, University of Washington, Seattle, WA 98195.ORCID 0000-0002-7699-6591
Jonathan T TingAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-8266-0392
Hongkui ZengAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-0326-5878
Ed S LeinAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0001-9012-6552
Brian KalmbachAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0003-3136-8097
Staci A SorensenAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-6799-2126
Brian R LeeAllen Institute for Brain Science; Seattle, WA, 98109.ORCID 0000-0002-3210-5638

Funding

Functionally guided adult whole brain cell atlas in human and NHPUM1MH130981 · NIMH · ALLEN INSTITUTE · PI Ed Lein, Hongkui Zeng · 2022 to 2026
$91.9M
A multimodal atlas of human brain cell typesU01MH114812 · NIMH · ALLEN INSTITUTE · PI LEIN, ED · 2017 to 2021
$19.2M
BRAIN CONNECTS: PatchLink, scalable tools for integrating connectomes, projectomes, and transcriptomesU01NS132267 · NINDS · ALLEN INSTITUTE · PI JARSKY, TIM M, SORENSEN, STACI A · 2023 to 2025
$5.7M
Multimodal analysis of primate infragranular pyramidal neurons and their modulationR01NS123959 · NINDS · ALLEN INSTITUTE · PI DEMBROW, NIKOLAI C, KALMBACH, BRIAN E. · 2021 to 2025
$2.8M
NIMH NIH HHS U01 MH114812NIMH NIH HHS UM1 MH130981NINDS NIH HHS R01 NS123959NINDS NIH HHS U01 NS132267
6 · The paper itself

Abstract

The human neocortex underlies higher cognition and is the engine of complex thought. Yet our understanding of its neuronal diversity is limited by sparse access to tissue, inconsistent sampling across studies, and a lack of multiple modality data. Although single-cell transcriptomic taxonomies are an important framework for characterizing cell type diversity, transcriptomic information alone cannot reveal the cellular properties that define neuronal computations. To address this, we performed Patch-seq, a method for collecting Morphology, Electrophysiology, and Transcriptomic data from a single neuron. We focused on glutamatergic, neocortical, excitatory neurons, the principal long-range projecting neurons of the cortex, and systematically integrated their morphoelectric features with transcriptomic identity. In combination with spatial transcriptomic data, we interrogated 39 of 42 transcriptomically-defined neuron types with a layer-centric perspective. Morphoelectric properties, such as cortical depth, apical dendrite structure, and excitability clearly distinguish transcriptomic subclasses and support many finer transcriptomic types. Morphoelectric properties are influenced by spatial location in supragranular layers, while deeper layers exhibit greater heterogeneity. Cross-species comparisons reveal conserved subclass organization but pronounced differences in apical dendrite arborization between mouse and human, and surprising similarities between human and macaque. Together, these datasets provide a unified multimodal reference that advances our understanding of human cortical circuitry and establishes a foundation for experimental and computational studies of human brain function and disease.

Identifiers

PMID41542430
PMCPMC12803161

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